RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ERC2	O15083	957 aa		13.72	□□□□□ -0.21
APTX-223	ENST00000479656	GLRX3	O76003	335 aa	Known RBP	13.72	□□□□□ -0.21
APTX-223	ENST00000479656	MMP10	P09238	476 aa		13.72	□□□□□ -0.21
APTX-223	ENST00000479656	AKAP2	Q9Y2D5	859 aa		13.72	□□□□□ -0.21
APTX-223	ENST00000479656	PDE8B	O95263	885 aa		13.71	□□□□□ -0.21
APTX-223	ENST00000479656	VGLL2	Q8N8G2	317 aa		13.71	□□□□□ -0.21
APTX-223	ENST00000479656	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.71	□□□□□ -0.21
APTX-223	ENST00000479656	PARP3	Q9Y6F1	533 aa		13.71	□□□□□ -0.21
APTX-223	ENST00000479656	MROH5	Q6ZUA9	1318 aa		13.71	□□□□□ -0.21
APTX-223	ENST00000479656	TAF5L	O75529	589 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	RPS8	P62241	208 aa	Known RBP	13.7	□□□□□ -0.22
APTX-223	ENST00000479656	TBC1D9	Q6ZT07	1266 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	DDX46	Q7L014	1031 aa	Known RBP	13.7	□□□□□ -0.22
APTX-223	ENST00000479656	BOLA2	Q9H3K6	86 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	RIC1	Q4ADV7	1423 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	COL4A1	P02462	1669 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	CDC45	O75419	566 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	ATP2B3	Q16720	1220 aa		13.7	□□□□□ -0.22
APTX-223	ENST00000479656	BSDC1	Q9NW68	430 aa	Predicted RBP	13.7	□□□□□ -0.22
APTX-223	ENST00000479656	ZNF609	O15014	1411 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	ATP5J	P18859	108 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	ADORA1	P30542	326 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	CHRND	Q07001	517 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	XAGE2	Q96GT9	111 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	TAF1	P21675	1872 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	CASZ1	Q86V15	1759 aa		13.69	□□□□□ -0.22
APTX-223	ENST00000479656	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.69	□□□□□ -0.22
APTX-223	ENST00000479656	SNAP23	O00161	211 aa		13.68	□□□□□ -0.22
APTX-223	ENST00000479656	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
APTX-223	ENST00000479656	CRY2	Q49AN0	593 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	GORAB	Q5T7V8	394 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	CNTROB	Q8N137	903 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	RPGR	Q92834	1020 aa	Known RBP	13.67	□□□□□ -0.22
APTX-223	ENST00000479656	MINPP1	Q9UNW1	487 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	LRP5	O75197	1615 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	FGFR2	P21802	821 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	MFAP1	P55081	439 aa	Known RBP	13.67	□□□□□ -0.22
APTX-223	ENST00000479656	PUM3	Q15397	648 aa	Known RBP	13.67	□□□□□ -0.22
APTX-223	ENST00000479656	BRIP1	Q9BX63	1249 aa		13.67	□□□□□ -0.22
APTX-223	ENST00000479656	SPEF2	Q9C093	1822 aa		13.66	□□□□□ -0.22
APTX-223	ENST00000479656	KLRG2	A4D1S0	409 aa	Predicted RBP	13.66	□□□□□ -0.22
APTX-223	ENST00000479656	GRAP	Q13588	217 aa		13.66	□□□□□ -0.22
APTX-223	ENST00000479656	CCDC158	Q5M9N0	1113 aa		13.66	□□□□□ -0.22
APTX-223	ENST00000479656	GRAPL	Q8TC17	118 aa	Predicted RBP	13.66	□□□□□ -0.22
APTX-223	ENST00000479656	LPIN2	Q92539	896 aa		13.66	□□□□□ -0.22
APTX-223	ENST00000479656	RBM17	Q96I25	401 aa	Known RBP	13.66	□□□□□ -0.22
APTX-223	ENST00000479656	NDUFB9	Q9Y6M9	179 aa		13.66	□□□□□ -0.22
APTX-223	ENST00000479656	CASC1	Q6TDU7	716 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	EVI5L	Q96CN4	794 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	EDC3	Q96F86	508 aa	Known RBP	13.65	□□□□□ -0.22
APTX-223	ENST00000479656	QSER1	Q2KHR3	1735 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	WTIP	A6NIX2	430 aa	Predicted RBP	13.65	□□□□□ -0.22
APTX-223	ENST00000479656	IFIT1	P09914	478 aa	Known RBP	13.65	□□□□□ -0.22
APTX-223	ENST00000479656	CHML	P26374	656 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	TTC39A	Q5SRH9	613 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	DNAJC2	Q99543	621 aa	Known RBP	13.65	□□□□□ -0.22
APTX-223	ENST00000479656	HAUS7	Q99871	368 aa		13.65	□□□□□ -0.22
APTX-223	ENST00000479656	SLC5A1	P13866	664 aa		13.64	□□□□□ -0.23
APTX-223	ENST00000479656	NRXN2	Q9P2S2	1712 aa		13.64	□□□□□ -0.23
APTX-223	ENST00000479656	HOXA10	P31260	410 aa	Predicted RBP	13.63	□□□□□ -0.23
APTX-223	ENST00000479656	PDE6B	P35913	854 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	SLC51A	Q86UW1	340 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	SLC16A10	Q8TF71	515 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	SRGN	P10124	158 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	CCDC102B	Q68D86	513 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
APTX-223	ENST00000479656	CRAMP1	Q96RY5	1269 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	ANKRD2	Q9GZV1	360 aa		13.63	□□□□□ -0.23
APTX-223	ENST00000479656	UPF2	Q9HAU5	1272 aa	Known RBP	13.63	□□□□□ -0.23
APTX-223	ENST00000479656	BBOX1	O75936	387 aa		13.62	□□□□□ -0.23
APTX-223	ENST00000479656	PHKA1	P46020	1223 aa		13.62	□□□□□ -0.23
APTX-223	ENST00000479656	UBE4A	Q14139	1066 aa		13.62	□□□□□ -0.23
APTX-223	ENST00000479656	SCARF1	Q14162	830 aa		13.62	□□□□□ -0.23
APTX-223	ENST00000479656	SNRK	Q9NRH2	765 aa		13.62	□□□□□ -0.23
APTX-223	ENST00000479656	GOLIM4	O00461	696 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	BCAM	P50895	628 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
APTX-223	ENST00000479656	FSD1	Q9BTV5	496 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	PAG1	Q9NWQ8	432 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	ANKRD31	Q8N7Z5	1873 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	NPR1	P16066	1061 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	KCNJ4	P48050	445 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	R3HDM1	Q15032	1099 aa	Known RBP	13.61	□□□□□ -0.23
APTX-223	ENST00000479656	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.61	□□□□□ -0.23
APTX-223	ENST00000479656	ESYT1	Q9BSJ8	1104 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	ANTXR1	Q9H6X2	564 aa		13.61	□□□□□ -0.23
APTX-223	ENST00000479656	ZBTB7A	O95365	584 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	MCAM	P43121	646 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	ZAP70	P43403	619 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	CWC27	Q6UX04	472 aa	Known RBP	13.6	□□□□□ -0.23
APTX-223	ENST00000479656	PI16	Q6UXB8	463 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	C22orf23	Q9BZE7	217 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	DIAPH3	Q9NSV4	1193 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	ANKIB1	Q9P2G1	1089 aa		13.6	□□□□□ -0.23
APTX-223	ENST00000479656	UQCRFS1P1	P0C7P4	283 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	ARID4A	P29374	1257 aa	Predicted RBP	13.59	□□□□□ -0.23
APTX-223	ENST00000479656	ALDH1B1	P30837	517 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	GYG1	P46976	350 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	C2CD5	Q86YS7	1000 aa		13.59	□□□□□ -0.23
APTX-223	ENST00000479656	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms