RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 U2AF1Q01081 240 aaKnown RBP eCLIP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 KIF23Q02241 960 aaPredicted RBP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 KIAA2012Q0VF49 1180 aa12.91□□□□□ -0.34
GPNMB-211ENST00000479625 TAF7Q15545 349 aaPredicted RBP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 PRPF38BQ5VTL8 546 aaKnown RBP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 MICALL2Q8IY33 904 aa12.91□□□□□ -0.34
GPNMB-211ENST00000479625 SUPT20HQ8NEM7 779 aa12.91□□□□□ -0.34
GPNMB-211ENST00000479625 TMX4Q9H1E5 349 aaPredicted RBP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 CNOT7Q9UIV1 285 aaKnown RBP12.91□□□□□ -0.34
GPNMB-211ENST00000479625 TRPA1O75762 1119 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 TBC1D10BQ4KMP7 808 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-211ENST00000479625 RGMBQ6NW40 437 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 SAMD7Q7Z3H4 446 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 ZNF467Q7Z7K2 595 aaPredicted RBP12.9□□□□□ -0.34
GPNMB-211ENST00000479625 MPNDQ8N594 471 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 CFAP53Q96M91 514 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 NLRP3Q96P20 1036 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 VPS33BQ9H267 617 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 SAGE1Q9NXZ1 904 aa12.9□□□□□ -0.34
GPNMB-211ENST00000479625 GIGYF2Q6Y7W6 1299 aaKnown RBP12.89□□□□□ -0.35
GPNMB-211ENST00000479625 PPP1R42Q7Z4L9 355 aa12.89□□□□□ -0.35
GPNMB-211ENST00000479625 THUMPD2Q9BTF0 503 aaKnown RBP12.89□□□□□ -0.35
GPNMB-211ENST00000479625 GBA2Q9HCG7 927 aaPredicted RBP12.89□□□□□ -0.35
GPNMB-211ENST00000479625 RNF186Q9NXI6 227 aa12.89□□□□□ -0.35
GPNMB-211ENST00000479625 COLQQ9Y215 455 aaPredicted RBP12.89□□□□□ -0.35
GPNMB-211ENST00000479625 HTTP42858 3142 aa12.88□□□□□ -0.35
GPNMB-211ENST00000479625 HTATSF1O43719 755 aaKnown RBP12.88□□□□□ -0.35
GPNMB-211ENST00000479625 ZNF157P51786 506 aaPredicted RBP12.88□□□□□ -0.35
GPNMB-211ENST00000479625 EIF4A1P60842 406 aaKnown RBP12.88□□□□□ -0.35
GPNMB-211ENST00000479625 TNIP1Q15025 636 aa12.88□□□□□ -0.35
GPNMB-211ENST00000479625 KRT26Q7Z3Y9 468 aa12.88□□□□□ -0.35
GPNMB-211ENST00000479625 ZNF428Q96B54 188 aa12.88□□□□□ -0.35
GPNMB-211ENST00000479625 PAPPA2Q9BXP8 1791 aa12.88□□□□□ -0.35
GPNMB-211ENST00000479625 MKI67P46013 3256 aaKnown RBP12.87□□□□□ -0.35
GPNMB-211ENST00000479625 H7C1D1 291 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 PSMD14O00487 310 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 ANXA1P04083 346 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 HCLS1P14317 486 aaPredicted RBP12.87□□□□□ -0.35
GPNMB-211ENST00000479625 PARP10Q53GL7 1025 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 SP8Q8IXZ3 490 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 UTP14AQ9BVJ6 771 aaKnown RBP12.87□□□□□ -0.35
GPNMB-211ENST00000479625 DBNDD1Q9H9R9 158 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 NUDCQ9Y266 331 aa12.87□□□□□ -0.35
GPNMB-211ENST00000479625 ZNF646O15015 1829 aaPredicted RBP12.87□□□□□ -0.35
GPNMB-211ENST00000479625 CENPFP49454 3210 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 SLC10A3P09131 477 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 SLC10A5Q5PT55 438 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
GPNMB-211ENST00000479625 IER5LQ5T953 404 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 LRP10Q7Z4F1 713 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 CTU1Q7Z7A3 348 aaKnown RBP12.86□□□□□ -0.35
GPNMB-211ENST00000479625 C2orf69Q8N8R5 385 aa12.86□□□□□ -0.35
GPNMB-211ENST00000479625 ASTN2O75129 1339 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-211ENST00000479625 SPEF2Q9C093 1822 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 RTL9Q8NET4 1388 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 PPP2R1AP30153 589 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 GRAPQ13588 217 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 GRAPLQ8TC17 118 aaPredicted RBP12.85□□□□□ -0.35
GPNMB-211ENST00000479625 CCDC102AQ96A19 550 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 CSRNP1Q96S65 589 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 KCNQ5Q9NR82 932 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 HPS5Q9UPZ3 1129 aa12.85□□□□□ -0.35
GPNMB-211ENST00000479625 RIMBP2O15034 1052 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 BBOX1O75936 387 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 CHRM1P11229 460 aaPredicted RBP12.84□□□□□ -0.35
GPNMB-211ENST00000479625 DDX46Q7L014 1031 aaKnown RBP12.84□□□□□ -0.35
GPNMB-211ENST00000479625 RASAL3Q86YV0 1011 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 GGA3Q9NZ52 723 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 BRCA2P51587 3418 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 ERBB4Q15303 1308 aa12.84□□□□□ -0.35
GPNMB-211ENST00000479625 RBBP6Q7Z6E9 1792 aaKnown RBP12.84□□□□□ -0.35
GPNMB-211ENST00000479625 PDIA6Q15084 440 aa12.83□□□□□ -0.36
GPNMB-211ENST00000479625 KIF4BQ2VIQ3 1234 aa12.83□□□□□ -0.36
GPNMB-211ENST00000479625 NLRP10Q86W26 655 aa12.83□□□□□ -0.36
GPNMB-211ENST00000479625 PNISRQ8TF01 805 aaKnown RBP12.83□□□□□ -0.36
GPNMB-211ENST00000479625 DPF2Q92785 391 aa12.83□□□□□ -0.36
GPNMB-211ENST00000479625 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
GPNMB-211ENST00000479625 CDCA5Q96FF9 252 aa12.83□□□□□ -0.36
GPNMB-211ENST00000479625 ECE2O60344 883 aa12.82□□□□□ -0.36
GPNMB-211ENST00000479625 EIF2S2P20042 333 aaKnown RBP12.82□□□□□ -0.36
GPNMB-211ENST00000479625 DOK7Q18PE1 504 aa12.82□□□□□ -0.36
GPNMB-211ENST00000479625 WASHC4Q2M389 1173 aa12.82□□□□□ -0.36
GPNMB-211ENST00000479625 PLCG2P16885 1265 aa12.81□□□□□ -0.36
GPNMB-211ENST00000479625 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
GPNMB-211ENST00000479625 CELF1Q92879 486 aaKnown RBP12.81□□□□□ -0.36
GPNMB-211ENST00000479625 SCUBE2Q9NQ36 999 aa12.81□□□□□ -0.36
GPNMB-211ENST00000479625 TRMT112Q9UI30 125 aaKnown RBP12.81□□□□□ -0.36
GPNMB-211ENST00000479625 LAMB1P07942 1786 aa12.81□□□□□ -0.36
GPNMB-211ENST00000479625 PSEN1P49768 467 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 GPSM2P81274 684 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 AIMP1Q12904 312 aaKnown RBP12.8□□□□□ -0.36
GPNMB-211ENST00000479625 MAMSTRQ6ZN01 415 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 MOB2Q70IA6 237 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 SULF1Q8IWU6 871 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 ZNF296Q8WUU4 475 aaPredicted RBP12.8□□□□□ -0.36
GPNMB-211ENST00000479625 POLLQ9UGP5 575 aa12.8□□□□□ -0.36
GPNMB-211ENST00000479625 NSFL1CQ9UNZ2 370 aaKnown RBP12.8□□□□□ -0.36
GPNMB-211ENST00000479625 SCAF8Q9UPN6 1271 aaKnown RBP12.8□□□□□ -0.36
GPNMB-211ENST00000479625 SH3TC1Q8TE82 1336 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms