RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CTAGE8P0CG41 777 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 MFSD6Q6ZSS7 791 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 CTAGE6Q86UF2 777 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 CTAGE4Q8IX94 777 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 FSIP1Q8NA03 581 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 RAB3IL1Q8TBN0 382 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 FERMT2Q96AC1 680 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 ACSBG1Q96GR2 724 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 NLRP3Q96P20 1036 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 AKAP4Q5JQC9 854 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 ZNF804AQ7Z570 1209 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 NBPF11Q86T75 865 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 SELENOOQ9BVL4 669 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 UBA5Q9GZZ9 404 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 MBIPQ9NS73 344 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 STIM2Q9P246 746 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 ABCC10Q5T3U5 1492 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 A0A1B0GUL7 405 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 SSFA2P28290 1259 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC114Q96M63 670 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 DRC1Q96MC2 740 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 RASAL2Q9UJF2 1139 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 PLVAPQ9BX97 442 aa10.06□□□□□ -0.8
SYNE1-224ENST00000478916 PI4KAP2A4QPH2 592 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 ZBTB16Q05516 673 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 PI4KAP1Q8N8J0 262 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 LRRC59Q96AG4 307 aaKnown RBP10.05□□□□□ -0.8
SYNE1-224ENST00000478916 TUBB4AP04350 444 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 APBB1IPQ7Z5R6 666 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-224ENST00000478916 NOLC1Q14978 699 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE1-224ENST00000478916 STXBP4Q6ZWJ1 553 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 C10orf67Q8IYJ2 551 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 PYM1Q9BRP8 204 aaKnown RBP10.05□□□□□ -0.8
SYNE1-224ENST00000478916 PARP3Q9Y6F1 533 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 LMTK3Q96Q04 1460 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 NUP160Q12769 1436 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 TMEM67Q5HYA8 995 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 KANK3Q6NY19 840 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 GOLGA1Q92805 767 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 TRPM2O94759 1503 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 ACTN2P35609 894 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 ZNF165P49910 485 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 CALML4Q96GE6 196 aa10.05□□□□□ -0.8
SYNE1-224ENST00000478916 ATP10BO94823 1461 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 PABPN1LA6NDY0 278 aaKnown RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC77Q9BR77 488 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 UTP14AQ9BVJ6 771 aaKnown RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 HMG20BQ9P0W2 317 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 UBE2HP62256 183 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 AMPD3Q01432 767 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 LACTBP83111 547 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 MAP7D1Q3KQU3 841 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 DISP3Q9P2K9 1392 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 TPD52P55327 224 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 TACC1O75410 805 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 CEP120Q8N960 986 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 NCOA7Q8NI08 942 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 TCP11L1Q9NUJ3 509 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 RTCBQ9Y3I0 505 aaKnown RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 C16orf71Q8IYS4 520 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 RPUSD2Q8IZ73 545 aaKnown RBP10.04□□□□□ -0.8
SYNE1-224ENST00000478916 VPS18Q9P253 973 aa10.04□□□□□ -0.8
SYNE1-224ENST00000478916 EIF2AK4Q9P2K8 1649 aaKnown RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 SLU7O95391 586 aaKnown RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 TRIM27P14373 513 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 PPFIBP2Q8ND30 876 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 FEZ2Q9UHY8 353 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 EIF4G3O43432 1585 aaKnown RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 ZSCAN23Q3MJ62 389 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 LRSAM1Q6UWE0 723 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 SMAP1Q8IYB5 467 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 LIMCH1Q9UPQ0 1083 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CYLC1P35663 651 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 NIP7Q9Y221 180 aaKnown RBP eCLIP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CTAGE9A4FU28 777 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 MAP3K9P80192 1104 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CPLX4Q7Z7G2 160 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC82Q8N4S0 544 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 LRRC27Q9C0I9 530 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 TFCP2L1Q9NZI6 479 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 FLT4P35916 1363 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC172P0C7W6 258 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC40Q4G0X9 1142 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 KRT23Q9C075 422 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 LUC7L2Q9Y383 392 aaKnown RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 IARSP41252 1262 aaKnown RBP10.03□□□□□ -0.8
SYNE1-224ENST00000478916 PSMC4P43686 418 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 OGFRQ9NZT2 677 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 CHPF2Q9P2E5 772 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 PCDH11XQ9BZA7 1347 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 PCDH11YQ9BZA8 1340 aa10.03□□□□□ -0.8
SYNE1-224ENST00000478916 TSPY3P0CV98 308 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 TSPY8P0CW00 308 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 TPTE2Q6XPS3 522 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 FAM184BQ9ULE4 1060 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 SSX2IPQ9Y2D8 614 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 ATP11AP98196 1134 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 KLHL40Q2TBA0 621 aa10.02□□□□□ -0.8
SYNE1-224ENST00000478916 CCDC110Q8TBZ0 833 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms