RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 RPS6KB1P23443 525 aa14.6□□□□□ -0.07
PTPRF-212ENST00000477970 CAVIN1Q6NZI2 390 aaKnown RBP14.6□□□□□ -0.07
PTPRF-212ENST00000477970 PPP1R9BQ96SB3 815 aa14.6□□□□□ -0.07
PTPRF-212ENST00000477970 MCMDC2Q4G0Z9 681 aa14.6□□□□□ -0.07
PTPRF-212ENST00000477970 NOL8Q76FK4 1167 aaKnown RBP14.6□□□□□ -0.07
PTPRF-212ENST00000477970 CSF1RP07333 972 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 ZNF589Q86UQ0 364 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-212ENST00000477970 PIGBQ92521 554 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 QSER1Q2KHR3 1735 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 LAMA4Q16363 1823 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 STARD3NLO95772 234 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 CCDC173Q0VFZ6 552 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 KIF6Q6ZMV9 814 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 MARCH10Q8NA82 808 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-212ENST00000477970 JARID2Q92833 1246 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-212ENST00000477970 ARAP2Q8WZ64 1704 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 SYT1P21579 422 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 BLOC1S2Q6QNY1 142 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 SYAP1Q96A49 352 aaPredicted RBP14.59□□□□□ -0.07
PTPRF-212ENST00000477970 MAP3K15Q6ZN16 1313 aa14.59□□□□□ -0.07
PTPRF-212ENST00000477970 LARGE1O95461 756 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 KCNJ4P48050 445 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 ST3GAL1Q11201 340 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 HSP90AB3PQ58FF7 597 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 LRSAM1Q6UWE0 723 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 ZBTB3Q9H5J0 574 aa14.58□□□□□ -0.07
PTPRF-212ENST00000477970 F13A1P00488 732 aa14.58□□□□□ -0.08
PTPRF-212ENST00000477970 ZBTB38Q8NAP3 1195 aaPredicted RBP14.58□□□□□ -0.08
PTPRF-212ENST00000477970 DSCC1Q9BVC3 393 aa14.58□□□□□ -0.08
PTPRF-212ENST00000477970 NUP98P52948 1817 aa14.58□□□□□ -0.08
PTPRF-212ENST00000477970 ZNF831Q5JPB2 1677 aa14.58□□□□□ -0.08
PTPRF-212ENST00000477970 ME3Q16798 604 aa14.58□□□□□ -0.08
PTPRF-212ENST00000477970 GIGYF2Q6Y7W6 1299 aaKnown RBP14.57□□□□□ -0.08
PTPRF-212ENST00000477970 TMEM63CQ9P1W3 806 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 AKAP2Q9Y2D5 859 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 NASPP49321 788 aaPredicted RBP14.57□□□□□ -0.08
PTPRF-212ENST00000477970 CSPP1Q1MSJ5 1256 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 PAG1Q9NWQ8 432 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 TPCN1Q9ULQ1 816 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 MYH7P12883 1935 aa14.57□□□□□ -0.08
PTPRF-212ENST00000477970 CPA1P15085 419 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 GJB2P29033 226 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 ZMYM1Q5SVZ6 1142 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 DDX60Q8IY21 1712 aaKnown RBP14.56□□□□□ -0.08
PTPRF-212ENST00000477970 TOB2Q14106 344 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-212ENST00000477970 MTMR6Q9Y217 621 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 LAMB2P55268 1798 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 HMGB1P09429 215 aaKnown RBP14.56□□□□□ -0.08
PTPRF-212ENST00000477970 SF3B2Q13435 895 aaKnown RBP14.56□□□□□ -0.08
PTPRF-212ENST00000477970 CCDC83Q8IWF9 413 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 DNAJC10Q8IXB1 793 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 BCL11BQ9C0K0 894 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-212ENST00000477970 ASAP1Q9ULH1 1129 aa14.56□□□□□ -0.08
PTPRF-212ENST00000477970 PHF14O94880 888 aa14.55□□□□□ -0.08
PTPRF-212ENST00000477970 PDCP20941 246 aa14.55□□□□□ -0.08
PTPRF-212ENST00000477970 LRRFIP1Q32MZ4 808 aaKnown RBP14.55□□□□□ -0.08
PTPRF-212ENST00000477970 EDC3Q96F86 508 aaKnown RBP14.55□□□□□ -0.08
PTPRF-212ENST00000477970 TCHHQ07283 1943 aa14.55□□□□□ -0.08
PTPRF-212ENST00000477970 ERVV-1B6SEH8 477 aa14.55□□□□□ -0.08
PTPRF-212ENST00000477970 NCLP19338 710 aaKnown RBP14.55□□□□□ -0.08
PTPRF-212ENST00000477970 CYP19A1P11511 503 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-212ENST00000477970 BAG6P46379 1132 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 CCDC57Q2TAC2 916 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 USP48Q86UV5 1035 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 DNAJC2Q99543 621 aaKnown RBP14.54□□□□□ -0.08
PTPRF-212ENST00000477970 CHMP3Q9Y3E7 222 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 RIC1Q4ADV7 1423 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 A0A1B0GUL7 405 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 LRRC24Q50LG9 513 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 ZNF512BQ96KM6 892 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-212ENST00000477970 NSFL1CQ9UNZ2 370 aaKnown RBP14.54□□□□□ -0.08
PTPRF-212ENST00000477970 LETM1O95202 739 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-212ENST00000477970 UBE2HP62256 183 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 AK7Q96M32 723 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 NEK1Q96PY6 1258 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 CEP126Q9P2H0 1117 aa14.54□□□□□ -0.08
PTPRF-212ENST00000477970 EP400Q96L91 3159 aa14.53□□□□□ -0.08
PTPRF-212ENST00000477970 FBXL16Q8N461 479 aa14.53□□□□□ -0.08
PTPRF-212ENST00000477970 HS1BP3Q53T59 392 aa14.53□□□□□ -0.08
PTPRF-212ENST00000477970 ANP32BQ92688 251 aaKnown RBP14.53□□□□□ -0.08
PTPRF-212ENST00000477970 AGXT2Q9BYV1 514 aa14.53□□□□□ -0.08
PTPRF-212ENST00000477970 PLSCR1O15162 318 aa14.53□□□□□ -0.08
PTPRF-212ENST00000477970 RNF113AO15541 343 aaKnown RBP14.53□□□□□ -0.08
PTPRF-212ENST00000477970 ZFYP08048 801 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-212ENST00000477970 PRIM1P49642 420 aaKnown RBP14.53□□□□□ -0.08
PTPRF-212ENST00000477970 RBM27Q9P2N5 1060 aaKnown RBP14.53□□□□□ -0.08
PTPRF-212ENST00000477970 IFIT1P09914 478 aaKnown RBP14.52□□□□□ -0.08
PTPRF-212ENST00000477970 IL6STP40189 918 aaPredicted RBP14.52□□□□□ -0.08
PTPRF-212ENST00000477970 FOXD4L5Q5VV16 416 aaPredicted RBP14.52□□□□□ -0.08
PTPRF-212ENST00000477970 DDX46Q7L014 1031 aaKnown RBP14.52□□□□□ -0.08
PTPRF-212ENST00000477970 NLRP10Q86W26 655 aa14.52□□□□□ -0.08
PTPRF-212ENST00000477970 FOXD4L4Q8WXT5 416 aaPredicted RBP14.52□□□□□ -0.08
PTPRF-212ENST00000477970 PDLIM2Q96JY6 352 aa14.52□□□□□ -0.08
PTPRF-212ENST00000477970 CAMKK2Q96RR4 588 aa14.52□□□□□ -0.08
PTPRF-212ENST00000477970 CYP21A2P08686 494 aa14.52□□□□□ -0.09
PTPRF-212ENST00000477970 CHAMP1Q96JM3 812 aa14.52□□□□□ -0.09
PTPRF-212ENST00000477970 NEUROD6Q96NK8 337 aa14.52□□□□□ -0.09
PTPRF-212ENST00000477970 RBSNQ9H1K0 784 aa14.52□□□□□ -0.09
PTPRF-212ENST00000477970 ELP1O95163 1332 aa14.52□□□□□ -0.09
PTPRF-212ENST00000477970 AKAP11Q9UKA4 1901 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms