RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 NSFL1CQ9UNZ2 370 aaKnown RBP12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 KIAA0100Q14667 2235 aaKnown RBP12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 ANKRD36CQ5JPF3 1778 aa12.92□□□□□ -0.34
SMARCB1-206ENST00000477836 COL3A1P02461 1466 aaPredicted RBP12.91□□□□□ -0.34
SMARCB1-206ENST00000477836 UNC80Q8N2C7 3258 aa12.91□□□□□ -0.34
SMARCB1-206ENST00000477836 TMEM106CQ9BVX2 250 aa12.91□□□□□ -0.34
SMARCB1-206ENST00000477836 PTPN22Q9Y2R2 807 aa12.91□□□□□ -0.34
SMARCB1-206ENST00000477836 ALDH1A1P00352 501 aa12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 VIL1P09327 827 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 TMC4Q7Z404 712 aa12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 ARMC5Q96C12 935 aa12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 POLLQ9UGP5 575 aa12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 LRRC37AA6NMS7 1700 aa12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 DDX60Q8IY21 1712 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-206ENST00000477836 TCIRG1Q13488 830 aa12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 TAF7Q15545 349 aaPredicted RBP12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 CC2D1BQ5T0F9 858 aaKnown RBP12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 EYA3Q99504 573 aa12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 RSPH6AQ9H0K4 717 aa12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 RBM27Q9P2N5 1060 aaKnown RBP12.89□□□□□ -0.35
SMARCB1-206ENST00000477836 PITPNM2Q9BZ72 1349 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 CEP290O15078 2479 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 HSPA5P11021 654 aaKnown RBP12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 ZNF280AP59817 542 aaPredicted RBP12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 GPSM2P81274 684 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 CD99L2Q8TCZ2 262 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 ERO1AQ96HE7 468 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 MYOZ2Q9NPC6 264 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 SCN9AQ15858 1988 aa12.88□□□□□ -0.35
SMARCB1-206ENST00000477836 LAMA3Q16787 3333 aa12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 G3V3G9 751 aa12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 EIF4G2P78344 907 aaKnown RBP eCLIP12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 PTPN12Q05209 780 aaKnown RBP12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 PRKG1Q13976 671 aa12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 DCAF8Q5TAQ9 597 aa12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 CUL9Q8IWT3 2517 aa12.87□□□□□ -0.35
SMARCB1-206ENST00000477836 NF2P35240 595 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 SPRYD7Q5W111 196 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 RSBN1LQ6PCB5 846 aaPredicted RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 IFNL1Q8IU54 200 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 AGBL3Q8NEM8 1001 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 TBC1D16Q8TBP0 767 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 CELF1Q92879 486 aaKnown RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 THUMPD2Q9BTF0 503 aaKnown RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 ZC3H12CQ9C0D7 883 aaKnown RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 EFCC1Q9HA90 598 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 TRMT112Q9UI30 125 aaKnown RBP12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 ZNF609O15014 1411 aa12.86□□□□□ -0.35
SMARCB1-206ENST00000477836 USP17L8P0C7I0 530 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 MNX1P50219 401 aaPredicted RBP12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 SLC4A8Q2Y0W8 1093 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 NLRP10Q86W26 655 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 ZNF333Q96JL9 665 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 SH3TC1Q8TE82 1336 aa12.85□□□□□ -0.35
SMARCB1-206ENST00000477836 MANSC4A6NHS7 340 aaPredicted RBP12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 HTATSF1O43719 755 aaKnown RBP12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 MYCP01106 439 aaPredicted RBP12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 INHBEP58166 350 aa12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 EIF4A1P60842 406 aaKnown RBP12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 NBPF9Q3BBW0 867 aa12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 ARMC9Q7Z3E5 817 aa12.84□□□□□ -0.35
SMARCB1-206ENST00000477836 ZNF316A6NFI3 1004 aaPredicted RBP12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 IGF2BP3O00425 579 aaKnown RBP eCLIP12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 SLC9C1Q4G0N8 1177 aa12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 NBPF11Q86T75 865 aa12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 DPF3Q92784 378 aa12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
SMARCB1-206ENST00000477836 CAP1Q01518 475 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 SP3Q02447 781 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 HSP90AB3PQ58FF7 597 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 PNISRQ8TF01 805 aaKnown RBP12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 NECTIN2Q92692 538 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 GMLQ99445 158 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 ANGEL1Q9UNK9 670 aaKnown RBP12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 ERBB4Q15303 1308 aa12.82□□□□□ -0.36
SMARCB1-206ENST00000477836 COL4A1P02462 1669 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 UFL1O94874 794 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 ANXA1P04083 346 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 CRHR2Q13324 411 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 LDLRAD1Q5T700 205 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 LRP10Q7Z4F1 713 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 FZD1Q9UP38 647 aa12.81□□□□□ -0.36
SMARCB1-206ENST00000477836 WTIPA6NIX2 430 aaPredicted RBP12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 U2AF1L5P0DN76 240 aaPredicted RBP12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 U2AF1Q01081 240 aaKnown RBP eCLIP12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 PDIA6Q15084 440 aa12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 SLC10A4Q96EP9 437 aa12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 PTCH2Q9Y6C5 1203 aa12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 PSME4Q14997 1843 aa12.8□□□□□ -0.36
SMARCB1-206ENST00000477836 USP17L3A6NCW0 530 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 USP17L4A6NCW7 530 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 WNT10BO00744 389 aa12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 PER1O15534 1290 aaPredicted RBP12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 ZBTB48P10074 688 aaPredicted RBP12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 EIF2S2P20042 333 aaKnown RBP12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 AIMP1Q12904 312 aaKnown RBP12.79□□□□□ -0.36
SMARCB1-206ENST00000477836 SF3B3Q15393 1217 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms