RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 NFKB1P19838 968 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 ST13P50502 369 aaKnown RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 PTPN12Q05209 780 aaKnown RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 GNL2Q13823 731 aaKnown RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 ZNF394Q53GI3 561 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 KIAA0319Q5VV43 1072 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 USP48Q86UV5 1035 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 ZNF654Q8IZM8 581 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 AAASQ9NRG9 546 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 STRN4Q9NRL3 753 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 MARK1Q9P0L2 795 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 ZFATQ9P243 1243 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 DDX41Q9UJV9 622 aaKnown RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 TTF2Q9UNY4 1162 aaKnown RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 PCDHGB7Q9Y5F8 929 aa6.13□□□□□ -1.43
VPS13D-207ENST00000476169 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.13□□□□□ -1.43
VPS13D-207ENST00000476169 PSAPP07602 524 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 TNNI2P48788 182 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 SPEM2Q0P670 501 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 UBAP2LQ14157 1087 aaKnown RBP6.12□□□□□ -1.43
VPS13D-207ENST00000476169 GRIN2CQ14957 1233 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 DBN1Q16643 649 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 TRIM22Q8IYM9 498 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 ANKRD13AQ8IZ07 590 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 CCDC155Q8N6L0 562 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 ABHD17AQ96GS6 310 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 TANGO6Q9C0B7 1094 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 SALL4Q9UJQ4 1053 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 INPP5FQ9Y2H2 1132 aa6.12□□□□□ -1.43
VPS13D-207ENST00000476169 BNIP3LO60238 219 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 CD33P20138 364 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 FCGRTP55899 365 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 HYAL2Q12891 473 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 PEAR1Q5VY43 1037 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-207ENST00000476169 DPH6Q7L8W6 267 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 NCAPG2Q86XI2 1143 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 SLC43A3Q8NBI5 491 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 GLIS3Q8NEA6 775 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 BHMTQ93088 406 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 LIN7BQ9HAP6 207 aa6.11□□□□□ -1.43
VPS13D-207ENST00000476169 CUEDC1Q9NWM3 386 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-207ENST00000476169 TLR7Q9NYK1 1049 aaKnown RBP6.11□□□□□ -1.43
VPS13D-207ENST00000476169 MAP3K6O95382 1288 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 SOX18P35713 384 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 RACK1P63244 317 aaKnown RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 PLAURQ03405 335 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 LAPTM4AQ15012 233 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 PRPF40BQ6NWY9 871 aaKnown RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 RAB44Q7Z6P3 723 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 C3orf58Q8NDZ4 430 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 ZNF837Q96EG3 531 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 GMCL1Q96IK5 515 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 SLC30A3Q99726 388 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 OXCT2Q9BYC2 517 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 EFCC1Q9HA90 598 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 SENP2Q9HC62 589 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 SRA1Q9HD15 236 aaKnown RBP6.1□□□□□ -1.43
VPS13D-207ENST00000476169 NDFIP2Q9NV92 336 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 DACH1Q9UI36 760 aa6.1□□□□□ -1.43
VPS13D-207ENST00000476169 TMEM238LA0A1B0GVL6 79 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 POTECB2RU33 542 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 NEUROD1Q13562 356 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 COL13A1Q5TAT6 717 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-207ENST00000476169 DTHD1Q6ZMT9 781 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 ERMP1Q7Z2K6 904 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 GTPBP3Q969Y2 492 aaKnown RBP6.09□□□□□ -1.43
VPS13D-207ENST00000476169 KIFC2Q96AC6 838 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 OSMRQ99650 979 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 ZKSCAN3Q9BRR0 538 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 ABCB6Q9NP58 842 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 PRKAG2Q9UGJ0 569 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 HCN2Q9UL51 889 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 ATXN7L1Q9ULK2 861 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-207ENST00000476169 PHF24Q9UPV7 400 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 AKAP2Q9Y2D5 859 aa6.09□□□□□ -1.43
VPS13D-207ENST00000476169 KIF4AO95239 1232 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 XRCC5P13010 732 aaKnown RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 HOXD8P13378 290 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 ACPPP15309 386 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 FGFR3P22607 806 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 ITGA6P23229 1130 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 DNAJA1P31689 397 aaKnown RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 CCDC85BQ15834 202 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 GIMAP6Q6P9H5 292 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 DHX32Q7L7V1 743 aaKnown RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 NSUN5Q96P11 429 aaKnown RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 TCF12Q99081 682 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 NOC4LQ9BVI4 516 aaKnown RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 HIRIP3Q9BW71 556 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-207ENST00000476169 COPRSQ9NQ92 184 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 PPM1HQ9ULR3 514 aa6.08□□□□□ -1.44
VPS13D-207ENST00000476169 CADPSQ9ULU8 1353 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 ATP2B1P20020 1258 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 NRLP54845 237 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 ARID5AQ03989 594 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 CCNJLQ8IV13 435 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 SPACA7Q96KW9 195 aa6.07□□□□□ -1.44
VPS13D-207ENST00000476169 TRIM47Q96LD4 638 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms