RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 TNS4Q8IZW8 715 aa19.29■□□□□ 0.68
VARS-223ENST00000474643 POLLQ9UGP5 575 aa19.29■□□□□ 0.68
VARS-223ENST00000474643 CNOT7Q9UIV1 285 aaKnown RBP19.29■□□□□ 0.68
VARS-223ENST00000474643 DUOX1Q9NRD9 1551 aa19.28■□□□□ 0.68
VARS-223ENST00000474643 COL13A1Q5TAT6 717 aaPredicted RBP19.28■□□□□ 0.68
VARS-223ENST00000474643 MICALL2Q8IY33 904 aa19.28■□□□□ 0.68
VARS-223ENST00000474643 TBC1D16Q8TBP0 767 aa19.28■□□□□ 0.68
VARS-223ENST00000474643 GPR101Q96P66 508 aaPredicted RBP19.28■□□□□ 0.68
VARS-223ENST00000474643 ZNF408Q9H9D4 720 aa19.28■□□□□ 0.68
VARS-223ENST00000474643 YDJCA8MPS7 323 aa19.27■□□□□ 0.68
VARS-223ENST00000474643 TRAF5O00463 557 aa19.27■□□□□ 0.68
VARS-223ENST00000474643 PSMD14O00487 310 aa19.27■□□□□ 0.68
VARS-223ENST00000474643 FLIIQ13045 1269 aa19.27■□□□□ 0.68
VARS-223ENST00000474643 CWF19L2Q2TBE0 894 aaKnown RBP19.27■□□□□ 0.68
VARS-223ENST00000474643 ZBTB12Q9Y330 459 aaPredicted RBP19.27■□□□□ 0.68
VARS-223ENST00000474643 XDHP47989 1333 aa19.26■□□□□ 0.67
VARS-223ENST00000474643 RASSF10A6NK89 507 aa19.26■□□□□ 0.67
VARS-223ENST00000474643 ECE1P42892 770 aa19.26■□□□□ 0.67
VARS-223ENST00000474643 UBE3BQ7Z3V4 1068 aa19.26■□□□□ 0.67
VARS-223ENST00000474643 NEURL1BA8MQ27 555 aa19.25■□□□□ 0.67
VARS-223ENST00000474643 CELF2O95319 508 aaKnown RBP19.25■□□□□ 0.67
VARS-223ENST00000474643 IGKV5-2P06315 115 aa19.25■□□□□ 0.67
VARS-223ENST00000474643 RPS12P25398 132 aaKnown RBP19.25■□□□□ 0.67
VARS-223ENST00000474643 EXOSC9Q06265 439 aaKnown RBP19.25■□□□□ 0.67
VARS-223ENST00000474643 G2E3Q7L622 706 aa19.25■□□□□ 0.67
VARS-223ENST00000474643 BEGAINQ9BUH8 593 aa19.25■□□□□ 0.67
VARS-223ENST00000474643 PODXL2Q9NZ53 605 aa19.25■□□□□ 0.67
VARS-223ENST00000474643 CAPN15O75808 1086 aa19.24■□□□□ 0.67
VARS-223ENST00000474643 IGHMBP2P38935 993 aaKnown RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 TBC1D10BQ4KMP7 808 aaPredicted RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 TRPM4Q8TD43 1214 aa19.24■□□□□ 0.67
VARS-223ENST00000474643 ZC3H15Q8WU90 426 aaKnown RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 DNAAF4Q8WXU2 420 aa19.24■□□□□ 0.67
VARS-223ENST00000474643 DPF2Q92785 391 aa19.24■□□□□ 0.67
VARS-223ENST00000474643 GLIS2Q9BZE0 524 aaPredicted RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 SPINK5Q9NQ38 1064 aaPredicted RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 WDR33Q9C0J8 1336 aaKnown RBP19.24■□□□□ 0.67
VARS-223ENST00000474643 ATP2B4P23634 1241 aa19.23■□□□□ 0.67
VARS-223ENST00000474643 FMR1Q06787 632 aaKnown RBP eCLIP19.23■□□□□ 0.676e-8■■■■□ 25.2
VARS-223ENST00000474643 RBM26Q5T8P6 1007 aaKnown RBP19.23■□□□□ 0.67
VARS-223ENST00000474643 CDC37L1Q7L3B6 337 aa19.23■□□□□ 0.67
VARS-223ENST00000474643 GREM2Q9H772 168 aa19.23■□□□□ 0.67
VARS-223ENST00000474643 CTCFP49711 727 aaPredicted RBP19.22■□□□□ 0.67
VARS-223ENST00000474643 MAP2K1Q02750 393 aaPredicted RBP19.22■□□□□ 0.67
VARS-223ENST00000474643 FBXW7Q969H0 707 aa19.22■□□□□ 0.67
VARS-223ENST00000474643 DCPSQ96C86 337 aaKnown RBP19.22■□□□□ 0.67
VARS-223ENST00000474643 ZNF521Q96K83 1311 aa19.22■□□□□ 0.67
VARS-223ENST00000474643 E9PSI1 815 aa19.21■□□□□ 0.67
VARS-223ENST00000474643 SAMD7Q7Z3H4 446 aa19.21■□□□□ 0.67
VARS-223ENST00000474643 TTLL11Q8NHH1 800 aa19.21■□□□□ 0.67
VARS-223ENST00000474643 CAPNS2Q96L46 248 aa19.21■□□□□ 0.67
VARS-223ENST00000474643 MPHOSPH8Q99549 860 aa19.21■□□□□ 0.67
VARS-223ENST00000474643 COL4A1P02462 1669 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 SHTN1A0MZ66 631 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 FOXN1O15353 648 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 KCNJ4P48050 445 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 GCKRQ14397 625 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 LINS1Q8NG48 757 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 CHMP3Q9Y3E7 222 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 CACNA1FO60840 1977 aa19.2■□□□□ 0.66
VARS-223ENST00000474643 HIRAP54198 1017 aaPredicted RBP19.19■□□□□ 0.66
VARS-223ENST00000474643 HNRNPUQ00839 825 aaKnown RBP eCLIP19.19■□□□□ 0.66
VARS-223ENST00000474643 KIF4BQ2VIQ3 1234 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 CYP4F22Q6NT55 531 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 KRT26Q7Z3Y9 468 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 USP48Q86UV5 1035 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 KCNQ5Q9NR82 932 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 BSDC1Q9NW68 430 aaPredicted RBP19.19■□□□□ 0.66
VARS-223ENST00000474643 TLL2Q9Y6L7 1015 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 TRPM7Q96QT4 1865 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 RTL9Q8NET4 1388 aa19.19■□□□□ 0.66
VARS-223ENST00000474643 MYH3P11055 1940 aa19.18■□□□□ 0.66
VARS-223ENST00000474643 VAMP4O75379 141 aa19.18■□□□□ 0.66
VARS-223ENST00000474643 ITGA6P23229 1130 aa19.18■□□□□ 0.66
VARS-223ENST00000474643 CST9Q5W186 159 aa19.18■□□□□ 0.66
VARS-223ENST00000474643 SPEF2Q9C093 1822 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 H7C1W4 665 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 VIL1P09327 827 aaKnown RBP19.17■□□□□ 0.66
VARS-223ENST00000474643 FAM161AQ3B820 660 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 RSBN1LQ6PCB5 846 aaPredicted RBP19.17■□□□□ 0.66
VARS-223ENST00000474643 SULF1Q8IWU6 871 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 PGAP2Q9UHJ9 254 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 MINPP1Q9UNW1 487 aa19.17■□□□□ 0.66
VARS-223ENST00000474643 USP17L3A6NCW0 530 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 USP17L4A6NCW7 530 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 CCT4P50991 539 aaKnown RBP19.16■□□□□ 0.66
VARS-223ENST00000474643 SLFN5Q08AF3 891 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 TAF7LQ5H9L4 462 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 USP17L1Q7RTZ2 530 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 PODNQ7Z5L7 613 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 AGBL3Q8NEM8 1001 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 CDCA7LQ96GN5 454 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 ANKRD2Q9GZV1 360 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 WBP1LQ9NX94 342 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 MED23Q9ULK4 1368 aa19.16■□□□□ 0.66
VARS-223ENST00000474643 ANKRD18BA2A2Z9 1011 aa19.15■□□□□ 0.66
VARS-223ENST00000474643 F6X3S4 739 aa19.15■□□□□ 0.66
VARS-223ENST00000474643 SLC4A10Q6U841 1118 aa19.15■□□□□ 0.66
VARS-223ENST00000474643 SAPCD2Q86UD0 394 aa19.15■□□□□ 0.66
VARS-223ENST00000474643 GGA3Q9NZ52 723 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms