RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CMTR1Q8N1G2 835 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 IL22RA1Q8N6P7 574 aa8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 GALNT11Q8NCW6 608 aa8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 MRPL18Q9H0U6 180 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-212ENST00000474059 KRTAP4-8A0A0G2JLE6 195 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 TNFRSF10BO14763 440 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 CD97P48960 835 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 FAM69CQ0P6D2 419 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 MCTP1Q6DN14 999 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 CAPN12Q6ZSI9 719 aa8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 UBL7Q96S82 380 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-212ENST00000474059 BTBD11A6QL63 1104 aa8.05□□□□□ -1.12
CCDC88A-212ENST00000474059 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-212ENST00000474059 PRIMPOLQ96LW4 560 aa8.05□□□□□ -1.12
CCDC88A-212ENST00000474059 KCNK4Q9NYG8 393 aa8.05□□□□□ -1.12
CCDC88A-212ENST00000474059 ZMIZ1Q9ULJ6 1067 aa8.05□□□□□ -1.12
CCDC88A-212ENST00000474059 PSAPP07602 524 aa8.04□□□□□ -1.12
CCDC88A-212ENST00000474059 CDCA8Q53HL2 280 aa8.04□□□□□ -1.12
CCDC88A-212ENST00000474059 SSTR4P31391 388 aa8.03□□□□□ -1.12
CCDC88A-212ENST00000474059 ARMC10Q8N2F6 343 aa8.03□□□□□ -1.12
CCDC88A-212ENST00000474059 FAM200AQ8TCP9 573 aa8.03□□□□□ -1.12
CCDC88A-212ENST00000474059 VTI1AQ96AJ9 217 aa8.03□□□□□ -1.12
CCDC88A-212ENST00000474059 SRA1Q9HD15 236 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-212ENST00000474059 GHRHP01286 108 aa8.02□□□□□ -1.13
CCDC88A-212ENST00000474059 ATP11AP98196 1134 aa8.02□□□□□ -1.13
CCDC88A-212ENST00000474059 NLRP13Q86W25 1043 aa8.02□□□□□ -1.13
CCDC88A-212ENST00000474059 OR13H1Q8NG92 308 aa8.02□□□□□ -1.13
CCDC88A-212ENST00000474059 GOLGA2P5Q9HBQ8 144 aa8.02□□□□□ -1.13
CCDC88A-212ENST00000474059 KIAA1324LA8MWY0 1029 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-212ENST00000474059 ADAMTS4O75173 837 aa8.01□□□□□ -1.13
CCDC88A-212ENST00000474059 ARID4AP29374 1257 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-212ENST00000474059 PCMTD2Q9NV79 361 aa8.01□□□□□ -1.13
CCDC88A-212ENST00000474059 NOVA2Q9UNW9 492 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-212ENST00000474059 COL17A1Q9UMD9 1497 aaPredicted RBP8□□□□□ -1.13
CCDC88A-212ENST00000474059 PRMT3O60678 531 aa8□□□□□ -1.13
CCDC88A-212ENST00000474059 SLC51AQ86UW1 340 aa8□□□□□ -1.13
CCDC88A-212ENST00000474059 MAP4K3Q8IVH8 894 aa8□□□□□ -1.13
CCDC88A-212ENST00000474059 RAXQ9Y2V3 346 aa8□□□□□ -1.13
CCDC88A-212ENST00000474059 LINC01387J3KSC0 135 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 TGFB1P01137 390 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 GLB1P16278 677 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 SRPK2P78362 688 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 TXNDC11Q6PKC3 985 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 ZDHHC13Q8IUH4 622 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 STK32AQ8WU08 396 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 PPME1Q9Y570 386 aa7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 ACIN1Q9UKV3 1341 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-212ENST00000474059 KIF4AO95239 1232 aa7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 IGLV1-40P01703 118 aa7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 SWI5Q1ZZU3 235 aa7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 C16orf46Q6P387 395 aa7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 KIAA1211Q6ZU35 1233 aa7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 OAS3Q9Y6K5 1087 aaKnown RBP7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-212ENST00000474059 ZBTB39O15060 712 aa7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 ADAM11O75078 769 aa7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 CYP2E1P05181 493 aaPredicted RBP7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 FAM46AQ96IP4 442 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 RASSF4Q9H2L5 321 aa7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 SLAIN2Q9P270 581 aa7.97□□□□□ -1.13
CCDC88A-212ENST00000474059 UBAP1LF5GYI3 381 aa7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 SPINK2P20155 84 aa7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 FOXD4L4Q8WXT5 416 aaPredicted RBP7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 COL26A1Q96A83 441 aa7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 CARD10Q9BWT7 1032 aa7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 LACRTQ9GZZ8 138 aa7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.96□□□□□ -1.14
CCDC88A-212ENST00000474059 DDX3YO15523 660 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 EPHA1P21709 976 aa7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 BRD2P25440 801 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 ELOAQ14241 798 aaKnown RBP7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 ACAD11Q709F0 780 aa7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 CACTIN-AS1Q8N1I8 211 aa7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 FMNL2Q96PY5 1086 aa7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 MUC3BQ9H195 1237 aa7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 CXXC1Q9P0U4 656 aaPredicted RBP7.95□□□□□ -1.14
CCDC88A-212ENST00000474059 PRR19A6NJB7 356 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 RFX1P22670 979 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 CD68P34810 354 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 HYAL2Q12891 473 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 CEP120Q8N960 986 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 MKNK1Q9BUB5 465 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 RBSNQ9H1K0 784 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 C7orf69Q9H7B7 122 aa7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 SH2B1Q9NRF2 756 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 ZNF777Q9ULD5 760 aaPredicted RBP7.94□□□□□ -1.14
CCDC88A-212ENST00000474059 CDC27P30260 824 aa7.93□□□□□ -1.14
CCDC88A-212ENST00000474059 ZAP70P43403 619 aa7.93□□□□□ -1.14
CCDC88A-212ENST00000474059 CEP135Q66GS9 1140 aa7.93□□□□□ -1.14
CCDC88A-212ENST00000474059 UBASH3BQ8TF42 649 aa7.93□□□□□ -1.14
CCDC88A-212ENST00000474059 STOML1Q9UBI4 398 aa7.93□□□□□ -1.14
CCDC88A-212ENST00000474059 FSCN2O14926 492 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 ACPPP15309 386 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 CDC25BP30305 580 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 NFIAQ12857 509 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 NAA30Q147X3 362 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 TRIM42Q8IWZ5 723 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 GPR152Q8TDT2 470 aa7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 POP1Q99575 1024 aaKnown RBP7.92□□□□□ -1.14
CCDC88A-212ENST00000474059 PBX4Q9BYU1 374 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms