RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 VGLL2Q8N8G2 317 aa21.98■■□□□ 1.11
SMC4-211ENST00000469858 RGS17Q9UGC6 210 aaPredicted RBP21.98■■□□□ 1.11
SMC4-211ENST00000469858 PROM2Q8N271 834 aa21.97■■□□□ 1.11
SMC4-211ENST00000469858 TAF1P21675 1872 aa21.97■■□□□ 1.11
SMC4-211ENST00000469858 PDE8BO95263 885 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 IGHMBP2P38935 993 aaKnown RBP21.96■■□□□ 1.11
SMC4-211ENST00000469858 HSCBQ8IWL3 235 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 MROH5Q6ZUA9 1318 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 COL4A1P02462 1669 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 APBA3O96018 575 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 IFIT1P09914 478 aaKnown RBP21.96■■□□□ 1.11
SMC4-211ENST00000469858 MCCP23508 829 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 CCDC158Q5M9N0 1113 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 TTC39AQ5SRH9 613 aa21.96■■□□□ 1.11
SMC4-211ENST00000469858 DDX46Q7L014 1031 aaKnown RBP21.96■■□□□ 1.11
SMC4-211ENST00000469858 SSFA2P28290 1259 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 NMIQ13287 307 aaPredicted RBP21.95■■□□□ 1.1
SMC4-211ENST00000469858 SF3B3Q15393 1217 aaKnown RBP21.95■■□□□ 1.1
SMC4-211ENST00000469858 SLC10A5Q5PT55 438 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 TPTE2Q6XPS3 522 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 KIAA1211Q6ZU35 1233 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 HELBQ8NG08 1087 aaPredicted RBP21.95■■□□□ 1.1
SMC4-211ENST00000469858 FBXO41Q8TF61 875 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 FAM227BQ96M60 508 aa21.95■■□□□ 1.1
SMC4-211ENST00000469858 RABEP1Q15276 862 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 POTEAQ6S8J7 498 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 CCDC24Q8N4L8 307 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 GOLIM4O00461 696 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 NPHP1O15259 732 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 SNX21Q969T3 373 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 CDC5LQ99459 802 aaKnown RBP21.94■■□□□ 1.1
SMC4-211ENST00000469858 PAG1Q9NWQ8 432 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 ARAP2Q8WZ64 1704 aa21.94■■□□□ 1.1
SMC4-211ENST00000469858 RAD50Q92878 1312 aa21.93■■□□□ 1.1
SMC4-211ENST00000469858 CARMIL3Q8ND23 1372 aa21.93■■□□□ 1.1
SMC4-211ENST00000469858 PLSCR1O15162 318 aa21.93■■□□□ 1.1
SMC4-211ENST00000469858 EPB41L2O43491 1005 aaKnown RBP21.93■■□□□ 1.1
SMC4-211ENST00000469858 NFIXQ14938 502 aa21.93■■□□□ 1.1
SMC4-211ENST00000469858 LSG1Q9H089 658 aaKnown RBP21.93■■□□□ 1.1
SMC4-211ENST00000469858 TNS1Q9HBL0 1735 aaKnown RBP21.93■■□□□ 1.1
SMC4-211ENST00000469858 A0A0D9SFI3 127 aa21.92■■□□□ 1.1
SMC4-211ENST00000469858 PUM3Q15397 648 aaKnown RBP21.92■■□□□ 1.1
SMC4-211ENST00000469858 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.92■■□□□ 1.16e-8■■■■□ 23.9
SMC4-211ENST00000469858 KBTBD3Q8NAB2 608 aa21.92■■□□□ 1.1
SMC4-211ENST00000469858 NLRP3Q96P20 1036 aa21.92■■□□□ 1.1
SMC4-211ENST00000469858 RFX7Q2KHR2 1363 aa21.92■■□□□ 1.1
SMC4-211ENST00000469858 CD2BP2O95400 341 aaKnown RBP21.91■■□□□ 1.1
SMC4-211ENST00000469858 PALD1Q9ULE6 856 aa21.91■■□□□ 1.1
SMC4-211ENST00000469858 TNRC6CQ9HCJ0 1690 aaKnown RBP21.91■■□□□ 1.1
SMC4-211ENST00000469858 TAF5LO75529 589 aa21.9■■□□□ 1.1
SMC4-211ENST00000469858 GYS1P13807 737 aa21.9■■□□□ 1.1
SMC4-211ENST00000469858 HMGB2P26583 209 aaKnown RBP21.9■■□□□ 1.1
SMC4-211ENST00000469858 ANKRD18AQ8IVF6 992 aa21.9■■□□□ 1.1
SMC4-211ENST00000469858 A0A1B0GUL6 1792 aa21.9■■□□□ 1.1
SMC4-211ENST00000469858 FKBP4Q02790 459 aaKnown RBP eCLIP21.9■■□□□ 1.1
SMC4-211ENST00000469858 LPIN2Q92539 896 aa21.9■■□□□ 1.1
SMC4-211ENST00000469858 FGFR2P21802 821 aa21.89■■□□□ 1.09
SMC4-211ENST00000469858 HSPA4P34932 840 aa21.89■■□□□ 1.09
SMC4-211ENST00000469858 SCARF1Q14162 830 aa21.89■■□□□ 1.09
SMC4-211ENST00000469858 SNRKQ9NRH2 765 aa21.89■■□□□ 1.09
SMC4-211ENST00000469858 AKAP11Q9UKA4 1901 aa21.89■■□□□ 1.09
SMC4-211ENST00000469858 PTH1RQ03431 593 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 CNBD1Q8NA66 436 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 MED23Q9ULK4 1368 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 SNAP23O00161 211 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 CHGBP05060 677 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 SLC5A1P13866 664 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 ANAPC15P60006 121 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 CHRNDQ07001 517 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 ZNF827Q17R98 1081 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 SPRYD3Q8NCJ5 442 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 ANTXR1Q9H6X2 564 aa21.88■■□□□ 1.09
SMC4-211ENST00000469858 CCDC171Q6TFL3 1326 aa21.87■■□□□ 1.09
SMC4-211ENST00000469858 SLKQ9H2G2 1235 aaPredicted RBP21.87■■□□□ 1.09
SMC4-211ENST00000469858 TFCP2L1Q9NZI6 479 aa21.87■■□□□ 1.09
SMC4-211ENST00000469858 CELF1Q92879 486 aaKnown RBP21.87■■□□□ 1.09
SMC4-211ENST00000469858 ZAP70P43403 619 aa21.86■■□□□ 1.09
SMC4-211ENST00000469858 PHKA1P46020 1223 aa21.86■■□□□ 1.09
SMC4-211ENST00000469858 CCDC102BQ68D86 513 aa21.86■■□□□ 1.09
SMC4-211ENST00000469858 PI16Q6UXB8 463 aa21.86■■□□□ 1.09
SMC4-211ENST00000469858 ZNF589Q86UQ0 364 aaPredicted RBP21.86■■□□□ 1.09
SMC4-211ENST00000469858 MYH7P12883 1935 aa21.85■■□□□ 1.09
SMC4-211ENST00000469858 MCAMP43121 646 aa21.85■■□□□ 1.09
SMC4-211ENST00000469858 BSDC1Q9NW68 430 aaPredicted RBP21.85■■□□□ 1.09
SMC4-211ENST00000469858 RGPD3A6NKT7 1758 aaPredicted RBP21.85■■□□□ 1.09
SMC4-211ENST00000469858 RGPD4Q7Z3J3 1758 aa21.85■■□□□ 1.09
SMC4-211ENST00000469858 K7ELQ4 463 aaPredicted RBP21.85■■□□□ 1.09
SMC4-211ENST00000469858 ZNF512BQ96KM6 892 aaPredicted RBP21.85■■□□□ 1.09
SMC4-211ENST00000469858 ST18O60284 1047 aa21.84■■□□□ 1.09
SMC4-211ENST00000469858 PRR5LQ6MZQ0 368 aa21.84■■□□□ 1.09
SMC4-211ENST00000469858 AKT1S1Q96B36 256 aa21.84■■□□□ 1.09
SMC4-211ENST00000469858 SEC62Q99442 399 aaKnown RBP21.83■■□□□ 1.09
SMC4-211ENST00000469858 SERPINB2P05120 415 aa21.83■■□□□ 1.08
SMC4-211ENST00000469858 ARID4AP29374 1257 aaPredicted RBP21.83■■□□□ 1.08
SMC4-211ENST00000469858 KCNJ4P48050 445 aa21.83■■□□□ 1.08
SMC4-211ENST00000469858 RPS8P62241 208 aaKnown RBP21.83■■□□□ 1.08
SMC4-211ENST00000469858 SLFNL1Q499Z3 407 aa21.83■■□□□ 1.08
SMC4-211ENST00000469858 MCMDC2Q4G0Z9 681 aa21.83■■□□□ 1.08
SMC4-211ENST00000469858 IL17RAQ96F46 866 aa21.83■■□□□ 1.08
SMC4-211ENST00000469858 MYO5AQ9Y4I1 1855 aaKnown RBP21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms