RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 TRAF5O00463 557 aa22.39■■□□□ 1.17
COL7A1-206ENST00000466591 CTSWP56202 376 aa22.39■■□□□ 1.17
COL7A1-206ENST00000466591 ZBTB12Q9Y330 459 aaPredicted RBP22.39■■□□□ 1.17
COL7A1-206ENST00000466591 DUOX1Q9NRD9 1551 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 FANCIQ9NVI1 1328 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 RASSF10A6NK89 507 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 PSMD14O00487 310 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 CAPN15O75808 1086 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 ECE1P42892 770 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 CWF19L2Q2TBE0 894 aaKnown RBP22.38■■□□□ 1.17
COL7A1-206ENST00000466591 WDR63Q8IWG1 891 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 MYH16Q9H6N6 1097 aa22.38■■□□□ 1.17
COL7A1-206ENST00000466591 CELF2O95319 508 aaKnown RBP22.37■■□□□ 1.17
COL7A1-206ENST00000466591 FLIIQ13045 1269 aa22.37■■□□□ 1.17
COL7A1-206ENST00000466591 NCBP3Q53F19 620 aaKnown RBP22.37■■□□□ 1.17
COL7A1-206ENST00000466591 RBM26Q5T8P6 1007 aaKnown RBP22.37■■□□□ 1.17
COL7A1-206ENST00000466591 UBE3BQ7Z3V4 1068 aa22.37■■□□□ 1.17
COL7A1-206ENST00000466591 BEGAINQ9BUH8 593 aa22.37■■□□□ 1.17
COL7A1-206ENST00000466591 XDHP47989 1333 aa22.36■■□□□ 1.17
COL7A1-206ENST00000466591 RPS12P25398 132 aaKnown RBP22.36■■□□□ 1.17
COL7A1-206ENST00000466591 ZC3H15Q8WU90 426 aaKnown RBP22.36■■□□□ 1.17
COL7A1-206ENST00000466591 GLIS2Q9BZE0 524 aaPredicted RBP22.36■■□□□ 1.17
COL7A1-206ENST00000466591 WDR33Q9C0J8 1336 aaKnown RBP22.35■■□□□ 1.17
COL7A1-206ENST00000466591 NEURL1BA8MQ27 555 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 IGKV5-2P06315 115 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 IGHMBP2P38935 993 aaKnown RBP22.35■■□□□ 1.17
COL7A1-206ENST00000466591 FMR1Q06787 632 aaKnown RBP eCLIP22.35■■□□□ 1.17
COL7A1-206ENST00000466591 CDC37L1Q7L3B6 337 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 G2E3Q7L622 706 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 TRPM4Q8TD43 1214 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 DPF2Q92785 391 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 PODXL2Q9NZ53 605 aa22.35■■□□□ 1.17
COL7A1-206ENST00000466591 ATP2B4P23634 1241 aa22.34■■□□□ 1.17
COL7A1-206ENST00000466591 CTCFP49711 727 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-206ENST00000466591 MAP2K1Q02750 393 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-206ENST00000466591 TBC1D10BQ4KMP7 808 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-206ENST00000466591 EXOSC9Q06265 439 aaKnown RBP22.33■■□□□ 1.17
COL7A1-206ENST00000466591 SAMD7Q7Z3H4 446 aa22.33■■□□□ 1.17
COL7A1-206ENST00000466591 DNAAF4Q8WXU2 420 aa22.33■■□□□ 1.17
COL7A1-206ENST00000466591 DCPSQ96C86 337 aaKnown RBP22.33■■□□□ 1.17
COL7A1-206ENST00000466591 CAPNS2Q96L46 248 aa22.33■■□□□ 1.17
COL7A1-206ENST00000466591 GREM2Q9H772 168 aa22.33■■□□□ 1.17
COL7A1-206ENST00000466591 SHTN1A0MZ66 631 aa22.32■■□□□ 1.16
COL7A1-206ENST00000466591 FOXN1O15353 648 aa22.32■■□□□ 1.16
COL7A1-206ENST00000466591 TTLL11Q8NHH1 800 aa22.32■■□□□ 1.16
COL7A1-206ENST00000466591 FBXW7Q969H0 707 aa22.32■■□□□ 1.16
COL7A1-206ENST00000466591 MPHOSPH8Q99549 860 aa22.32■■□□□ 1.16
COL7A1-206ENST00000466591 COL4A1P02462 1669 aa22.31■■□□□ 1.16
COL7A1-206ENST00000466591 CYP4F22Q6NT55 531 aa22.31■■□□□ 1.16
COL7A1-206ENST00000466591 CHMP3Q9Y3E7 222 aa22.31■■□□□ 1.16
COL7A1-206ENST00000466591 TLL2Q9Y6L7 1015 aa22.31■■□□□ 1.16
COL7A1-206ENST00000466591 KCNJ4P48050 445 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 HIRAP54198 1017 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-206ENST00000466591 GCKRQ14397 625 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 CST9Q5W186 159 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 USP48Q86UV5 1035 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 KCNQ5Q9NR82 932 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 TRPM7Q96QT4 1865 aa22.3■■□□□ 1.16
COL7A1-206ENST00000466591 KIF4BQ2VIQ3 1234 aa22.29■■□□□ 1.16
COL7A1-206ENST00000466591 KRT26Q7Z3Y9 468 aa22.29■■□□□ 1.16
COL7A1-206ENST00000466591 LINS1Q8NG48 757 aa22.29■■□□□ 1.16
COL7A1-206ENST00000466591 BSDC1Q9NW68 430 aaPredicted RBP22.29■■□□□ 1.16
COL7A1-206ENST00000466591 RTL9Q8NET4 1388 aa22.28■■□□□ 1.16
COL7A1-206ENST00000466591 SULF1Q8IWU6 871 aa22.28■■□□□ 1.16
COL7A1-206ENST00000466591 PGAP2Q9UHJ9 254 aa22.28■■□□□ 1.16
COL7A1-206ENST00000466591 H7C1W4 665 aa22.27■■□□□ 1.16
COL7A1-206ENST00000466591 VAMP4O75379 141 aa22.27■■□□□ 1.16
COL7A1-206ENST00000466591 VIL1P09327 827 aaKnown RBP22.27■■□□□ 1.16
COL7A1-206ENST00000466591 ITGA6P23229 1130 aa22.27■■□□□ 1.16
COL7A1-206ENST00000466591 RSBN1LQ6PCB5 846 aaPredicted RBP22.27■■□□□ 1.16
COL7A1-206ENST00000466591 WBP1LQ9NX94 342 aa22.27■■□□□ 1.16
COL7A1-206ENST00000466591 MYH3P11055 1940 aa22.27■■□□□ 1.16
COL7A1-206ENST00000466591 USP17L3A6NCW0 530 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 USP17L4A6NCW7 530 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 LBX1P52954 281 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 FAM161AQ3B820 660 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 USP17L1Q7RTZ2 530 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 PODNQ7Z5L7 613 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 ANKRD2Q9GZV1 360 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 PRDM10Q9NQV6 1147 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 MINPP1Q9UNW1 487 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 SPEF2Q9C093 1822 aa22.26■■□□□ 1.15
COL7A1-206ENST00000466591 ANKRD18BA2A2Z9 1011 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 CCT4P50991 539 aaKnown RBP22.25■■□□□ 1.15
COL7A1-206ENST00000466591 TAF7LQ5H9L4 462 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 SAPCD2Q86UD0 394 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 C2orf69Q8N8R5 385 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 AGBL3Q8NEM8 1001 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 PCNTO95613 3336 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 MED23Q9ULK4 1368 aa22.25■■□□□ 1.15
COL7A1-206ENST00000466591 SLC4A10Q6U841 1118 aa22.24■■□□□ 1.15
COL7A1-206ENST00000466591 OGFOD1Q8N543 542 aa22.24■■□□□ 1.15
COL7A1-206ENST00000466591 GGA3Q9NZ52 723 aa22.24■■□□□ 1.15
COL7A1-206ENST00000466591 LEMD3Q9Y2U8 911 aa22.24■■□□□ 1.15
COL7A1-206ENST00000466591 F6X3S4 739 aa22.23■■□□□ 1.15
COL7A1-206ENST00000466591 USP17L8P0C7I0 530 aa22.23■■□□□ 1.15
COL7A1-206ENST00000466591 HUNKP57058 714 aa22.23■■□□□ 1.15
COL7A1-206ENST00000466591 PLA2G12BQ9BX93 195 aa22.23■■□□□ 1.15
COL7A1-206ENST00000466591 C9orf78Q9NZ63 289 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-206ENST00000466591 ADM5C9JUS6 153 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms