RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CCDC186Q7Z3E2 898 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 NUTM2AQ8IVF1 878 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-216ENST00000461872 WDR19Q8NEZ3 1342 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 CARMIL3Q8ND23 1372 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 DSCC1Q9BVC3 393 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 CCDC69A6NI79 296 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 BRD3Q15059 726 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 KIAA1524Q8TCG1 905 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 LTV1Q96GA3 475 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-216ENST00000461872 NEUROD6Q96NK8 337 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 BPIFA3Q9BQP9 254 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 KRT23Q9C075 422 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 USP6P35125 1406 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 APPP05067 770 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 RBM6P78332 1123 aaKnown RBP8.1□□□□□ -1.11
SYNE1-216ENST00000461872 TTC39AQ5SRH9 613 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 NUTM1Q86Y26 1132 aa8.1□□□□□ -1.11
SYNE1-216ENST00000461872 MROH2AA6NES4 1674 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 IGSF1Q8N6C5 1336 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 SMARCA5O60264 1052 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 UQCRFS1P1P0C7P4 283 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 ANKLE2Q86XL3 938 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 GTF3C6Q969F1 213 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 TTF2Q9UNY4 1162 aaKnown RBP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 RILPL1Q5EBL4 403 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 LUZP1Q86V48 1076 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 MTA3Q9BTC8 594 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 IKBKBO14920 756 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 DNM1Q05193 864 aaKnown RBP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 PREX1Q8TCU6 1659 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 KAT6BQ8WYB5 2073 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 PIK3C2BO00750 1634 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 IGSF3O75054 1194 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 SNRPA1P09661 255 aaKnown RBP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 ZNF274Q96GC6 653 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE1-216ENST00000461872 SPTLC2O15270 562 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 TSGA10IPQ3SY00 556 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 SPATA31D1Q6ZQQ2 1576 aa8.09□□□□□ -1.11
SYNE1-216ENST00000461872 MYL5Q02045 173 aa8.09□□□□□ -1.12
SYNE1-216ENST00000461872 GPT2Q8TD30 523 aa8.09□□□□□ -1.12
SYNE1-216ENST00000461872 CCDC12Q8WUD4 166 aaPredicted RBP8.09□□□□□ -1.12
SYNE1-216ENST00000461872 RAB34Q9BZG1 259 aa8.09□□□□□ -1.12
SYNE1-216ENST00000461872 DDX21Q9NR30 783 aaKnown RBP eCLIP8.09□□□□□ -1.12
SYNE1-216ENST00000461872 USO1O60763 962 aaKnown RBP8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CERS3Q8IU89 383 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 BRF1Q92994 677 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PI4KAP2A4QPH2 592 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 SYKP43405 635 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 GPR161Q8N6U8 529 aaKnown RBP8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PDILTQ8N807 584 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PI4KAP1Q8N8J0 262 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 LEO1Q8WVC0 666 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-216ENST00000461872 ALS2CR12Q96Q35 445 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 TSPYL6Q8N831 410 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 MLKLQ8NB16 471 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PRM3Q9NNZ6 103 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PHLPP2Q6ZVD8 1323 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CALM1P0DP23 149 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CALM2P0DP24 149 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CALM3P0DP25 149 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 MED4Q9NPJ6 270 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 PHF8Q9UPP1 1060 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 SNX14Q9Y5W7 946 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 TAOK2Q9UL54 1235 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 DIP2AQ14689 1571 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 DIP2CQ9Y2E4 1556 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 EFCAB8A8MWE9 144 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 ATP5JP18859 108 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 KRT83P78385 493 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CLUL1Q15846 466 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 GIMAP6Q6P9H5 292 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 HDXQ7Z353 690 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 ADALQ6DHV7 355 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 GAS2L3Q86XJ1 694 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 CEP89Q96ST8 783 aa8.08□□□□□ -1.12
SYNE1-216ENST00000461872 POLA2Q14181 598 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 TMEM87BQ96K49 555 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 UBAC1Q9BSL1 405 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 RTL9Q8NET4 1388 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 HSP90AB2PQ58FF8 381 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 TTLL5Q6EMB2 1281 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 RBM42Q9BTD8 480 aaKnown RBP8.07□□□□□ -1.12
SYNE1-216ENST00000461872 CTAGE9A4FU28 777 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 GOLGA8BA8MQT2 603 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 CNNM3Q8NE01 707 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 IP6K1Q92551 441 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 H0YHG0 523 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 RCAN1P53805 252 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 CKAP2LQ8IYA6 745 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 DDX12PQ92771 950 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 TOMM22Q9NS69 142 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 TTC12Q9H892 705 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-216ENST00000461872 MAP3K12Q12852 859 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 FAM177A1Q8N128 213 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-216ENST00000461872 TSGA10Q9BZW7 698 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 VPS36Q86VN1 386 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 GOLGA6L10A0A0M3HER8 536 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 AMPD3Q01432 767 aa8.07□□□□□ -1.12
SYNE1-216ENST00000461872 CROCCP2Q86T23 111 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms