RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 APLP1P51693 650 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 NUCB1Q02818 461 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 LRRC24Q50LG9 513 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 PRR5LQ6MZQ0 368 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 TPTE2Q6XPS3 522 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 PLA2G12BQ9BX93 195 aa12.76□□□□□ -0.37
USP39-210ENST00000459775 ITGA6P23229 1130 aa12.75□□□□□ -0.37
USP39-210ENST00000459775 CNPY4Q8N129 248 aa12.75□□□□□ -0.37
USP39-210ENST00000459775 CNBD1Q8NA66 436 aa12.75□□□□□ -0.37
USP39-210ENST00000459775 GCC1Q96CN9 775 aa12.75□□□□□ -0.37
USP39-210ENST00000459775 COL4A1P02462 1669 aa12.75□□□□□ -0.37
USP39-210ENST00000459775 OS9Q13438 667 aaPredicted RBP12.74□□□□□ -0.37
USP39-210ENST00000459775 CHD1LQ86WJ1 897 aa12.74□□□□□ -0.37
USP39-210ENST00000459775 NLGN1Q8N2Q7 840 aa12.74□□□□□ -0.37
USP39-210ENST00000459775 HDAC5Q9UQL6 1122 aa12.74□□□□□ -0.37
USP39-210ENST00000459775 SASH1O94885 1247 aa12.74□□□□□ -0.37
USP39-210ENST00000459775 TSHZ3Q63HK5 1081 aa12.74□□□□□ -0.37
USP39-210ENST00000459775 CCDC57Q2TAC2 916 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 PLCD4Q9BRC7 762 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 NYXQ9GZU5 481 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 RGL2O15211 777 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 IFIT5Q13325 482 aaKnown RBP12.73□□□□□ -0.37
USP39-210ENST00000459775 RHPN1Q8TCX5 695 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 COPRSQ9NQ92 184 aa12.73□□□□□ -0.37
USP39-210ENST00000459775 NOP58Q9Y2X3 529 aaKnown RBP12.73□□□□□ -0.37
USP39-210ENST00000459775 SLC10A5Q5PT55 438 aa12.72□□□□□ -0.37
USP39-210ENST00000459775 ATG9AQ7Z3C6 839 aa12.72□□□□□ -0.37
USP39-210ENST00000459775 PRDM10Q9NQV6 1147 aa12.72□□□□□ -0.37
USP39-210ENST00000459775 DDX60Q8IY21 1712 aaKnown RBP12.71□□□□□ -0.37
USP39-210ENST00000459775 WTIPA6NIX2 430 aaPredicted RBP12.71□□□□□ -0.37
USP39-210ENST00000459775 SNAP23O00161 211 aa12.71□□□□□ -0.37
USP39-210ENST00000459775 SETQ01105 290 aaPredicted RBP12.71□□□□□ -0.37
USP39-210ENST00000459775 TFCP2Q12800 502 aa12.71□□□□□ -0.37
USP39-210ENST00000459775 G3BP1Q13283 466 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP39-210ENST00000459775 LRRCC1Q9C099 1032 aa12.71□□□□□ -0.37
USP39-210ENST00000459775 GRIPAP1Q4V328 841 aa12.71□□□□□ -0.38
USP39-210ENST00000459775 HELBQ8NG08 1087 aaPredicted RBP12.71□□□□□ -0.38
USP39-210ENST00000459775 CELF1Q92879 486 aaKnown RBP12.71□□□□□ -0.38
USP39-210ENST00000459775 NLRP3Q96P20 1036 aa12.71□□□□□ -0.38
USP39-210ENST00000459775 CWC22Q9HCG8 908 aaKnown RBP12.71□□□□□ -0.38
USP39-210ENST00000459775 RNF216Q9NWF9 866 aaPredicted RBP12.71□□□□□ -0.38
USP39-210ENST00000459775 PARP3Q9Y6F1 533 aa12.71□□□□□ -0.38
USP39-210ENST00000459775 ANKRD18BA2A2Z9 1011 aa12.7□□□□□ -0.38
USP39-210ENST00000459775 CCDC152Q4G0S7 254 aa12.7□□□□□ -0.38
USP39-210ENST00000459775 SECISBP2LQ93073 1101 aaKnown RBP12.7□□□□□ -0.38
USP39-210ENST00000459775 TNRC6CQ9HCJ0 1690 aaKnown RBP12.7□□□□□ -0.38
USP39-210ENST00000459775 SF3B3Q15393 1217 aaKnown RBP12.7□□□□□ -0.38
USP39-210ENST00000459775 LDHAL6AQ6ZMR3 332 aa12.7□□□□□ -0.38
USP39-210ENST00000459775 TLR7Q9NYK1 1049 aaKnown RBP12.7□□□□□ -0.38
USP39-210ENST00000459775 EYA2O00167 538 aa12.69□□□□□ -0.38
USP39-210ENST00000459775 EAF2Q96CJ1 260 aaPredicted RBP12.69□□□□□ -0.38
USP39-210ENST00000459775 CCDC8Q9H0W5 538 aaPredicted RBP12.69□□□□□ -0.38
USP39-210ENST00000459775 TAF1P21675 1872 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 KIF3CO14782 793 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 ST5P78524 1137 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 KIF1BPQ96EK5 621 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 PRDM16Q9HAZ2 1276 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 CNNM1Q9NRU3 951 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 TAF5LO75529 589 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 PTMSP20962 102 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 TIMM10P62072 90 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 PLEKHM2Q8IWE5 1019 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 RIPOR2Q9Y4F9 1068 aa12.68□□□□□ -0.38
USP39-210ENST00000459775 RAB11FIP3O75154 756 aa12.67□□□□□ -0.38
USP39-210ENST00000459775 TOMM70O94826 608 aa12.67□□□□□ -0.38
USP39-210ENST00000459775 AACSQ86V21 672 aa12.67□□□□□ -0.38
USP39-210ENST00000459775 ZBTB47Q9UFB7 747 aaPredicted RBP12.67□□□□□ -0.38
USP39-210ENST00000459775 WWC3Q9ULE0 1092 aa12.67□□□□□ -0.38
USP39-210ENST00000459775 CHRNA5P30532 468 aa12.67□□□□□ -0.38
USP39-210ENST00000459775 ZNF526Q8TF50 670 aaPredicted RBP12.67□□□□□ -0.38
USP39-210ENST00000459775 HSP90AB4PQ58FF6 505 aa12.66□□□□□ -0.38
USP39-210ENST00000459775 OLFM4Q6UX06 510 aa12.66□□□□□ -0.38
USP39-210ENST00000459775 MPHOSPH8Q99549 860 aa12.66□□□□□ -0.38
USP39-210ENST00000459775 WDR90Q96KV7 1748 aa12.66□□□□□ -0.38
USP39-210ENST00000459775 METTL24Q5JXM2 366 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 BRIP1Q9BX63 1249 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 MAP4K4O95819 1239 aaPredicted RBP12.65□□□□□ -0.38
USP39-210ENST00000459775 MCCP23508 829 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 ADORA1P30542 326 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 IL15P40933 162 aaPredicted RBP12.65□□□□□ -0.38
USP39-210ENST00000459775 RPS8P62241 208 aaKnown RBP12.65□□□□□ -0.38
USP39-210ENST00000459775 RIC1Q4ADV7 1423 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 TNNI3KQ59H18 835 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 DDX46Q7L014 1031 aaKnown RBP12.65□□□□□ -0.38
USP39-210ENST00000459775 ANKRD18AQ8IVF6 992 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 RPGRQ92834 1020 aaKnown RBP12.65□□□□□ -0.38
USP39-210ENST00000459775 NEUROD6Q96NK8 337 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 DBNDD2Q9BQY9 259 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 FPGT-TNNI3KV9GXZ4 949 aa12.65□□□□□ -0.38
USP39-210ENST00000459775 LAMB2P55268 1798 aa12.65□□□□□ -0.39
USP39-210ENST00000459775 SALL3Q9BXA9 1300 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 KIF13BQ9NQT8 1826 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 CIAO1O76071 339 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 IGHMBP2P38935 993 aaKnown RBP12.64□□□□□ -0.39
USP39-210ENST00000459775 PDE1AP54750 535 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 CRY2Q49AN0 593 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 ERC1Q8IUD2 1116 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 CLASRPQ8N2M8 674 aaKnown RBP12.64□□□□□ -0.39
USP39-210ENST00000459775 CEP126Q9P2H0 1117 aa12.64□□□□□ -0.39
USP39-210ENST00000459775 DBNLQ9UJU6 430 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms