RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 SLC10A5Q5PT55 438 aa11.02□□□□□ -0.65
COL28A1-205ENST00000453441 SUSD4Q5VX71 490 aa11.02□□□□□ -0.65
COL28A1-205ENST00000453441 ZKSCAN2Q63HK3 967 aa11.02□□□□□ -0.65
COL28A1-205ENST00000453441 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.02□□□□□ -0.65
COL28A1-205ENST00000453441 TRMT112Q9UI30 125 aaKnown RBP11.02□□□□□ -0.65
COL28A1-205ENST00000453441 RCAN3Q9UKA8 241 aa11.02□□□□□ -0.65
COL28A1-205ENST00000453441 NOB1Q9ULX3 412 aaKnown RBP11.02□□□□□ -0.65
COL28A1-205ENST00000453441 NEURL1BA8MQ27 555 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 PCCAP05165 728 aaPredicted RBP11.01□□□□□ -0.65
COL28A1-205ENST00000453441 BEND3Q5T5X7 828 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 ATF7IPQ6VMQ6 1270 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 ZBTB38Q8NAP3 1195 aaPredicted RBP11.01□□□□□ -0.65
COL28A1-205ENST00000453441 FHDC1Q9C0D6 1143 aaPredicted RBP11.01□□□□□ -0.65
COL28A1-205ENST00000453441 SRCIN1Q9C0H9 1055 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 HDAC5Q9UQL6 1122 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 CDHR2Q9BYE9 1310 aa11.01□□□□□ -0.65
COL28A1-205ENST00000453441 LAMB2P55268 1798 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 KLRG2A4D1S0 409 aaPredicted RBP11□□□□□ -0.65
COL28A1-205ENST00000453441 ATP5J2-PTCD1G3V325 749 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 DPYSL4O14531 572 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 IGKV5-2P06315 115 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 PBX2P40425 430 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 GCKRQ14397 625 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 PPP4R3BQ5MIZ7 849 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 SYT17Q9BSW7 474 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 KRTAP3-3Q9BYR6 98 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 KRTAP3-2Q9BYR7 98 aa11□□□□□ -0.65
COL28A1-205ENST00000453441 DLEC1Q9Y238 1755 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 F6X3S4 739 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 H0YIN7 160 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 BCAR3O75815 825 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 SLC4A10Q6U841 1118 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 FRAT1Q92837 279 aaPredicted RBP10.99□□□□□ -0.65
COL28A1-205ENST00000453441 NLRP3Q96P20 1036 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 ABCC4O15439 1325 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 ANKRD31Q8N7Z5 1873 aa10.99□□□□□ -0.65
COL28A1-205ENST00000453441 FAM177BA6PVY3 158 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 H7C1W4 665 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 TRIM27P14373 513 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 CWF19L2Q2TBE0 894 aaKnown RBP10.98□□□□□ -0.65
COL28A1-205ENST00000453441 CRY2Q49AN0 593 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 ERFEQ4G0M1 354 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 INTS3Q68E01 1043 aaKnown RBP10.98□□□□□ -0.65
COL28A1-205ENST00000453441 STYK1Q6J9G0 422 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 ABCC12Q96J65 1359 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 KIAA1551Q9HCM1 1747 aa10.98□□□□□ -0.65
COL28A1-205ENST00000453441 SPDYE16A6NNV3 312 aaPredicted RBP10.97□□□□□ -0.65
COL28A1-205ENST00000453441 GRM8O00222 908 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 IRS4O14654 1257 aaPredicted RBP10.97□□□□□ -0.65
COL28A1-205ENST00000453441 PDE8AO60658 829 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 NPR1P16066 1061 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 NUTM1Q86Y26 1132 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 C2CD5Q86YS7 1000 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 FTSJ3Q8IY81 847 aaKnown RBP10.97□□□□□ -0.65
COL28A1-205ENST00000453441 CNKSR1Q969H4 720 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 MASTLQ96GX5 879 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 PLA2G12BQ9BX93 195 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 CHMP4BQ9H444 224 aaKnown RBP10.97□□□□□ -0.65
COL28A1-205ENST00000453441 C9orf78Q9NZ63 289 aaPredicted RBP10.97□□□□□ -0.65
COL28A1-205ENST00000453441 PIM2Q9P1W9 311 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 UTYO14607 1347 aa10.97□□□□□ -0.65
COL28A1-205ENST00000453441 MYH3P11055 1940 aa10.96□□□□□ -0.65
COL28A1-205ENST00000453441 BRCA1P38398 1863 aaKnown RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 DDX60Q8IY21 1712 aaKnown RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 SRGNP10124 158 aa10.96□□□□□ -0.65
COL28A1-205ENST00000453441 ALDH1B1P30837 517 aa10.96□□□□□ -0.65
COL28A1-205ENST00000453441 HOXA10P31260 410 aaPredicted RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 FOSBP53539 338 aa10.96□□□□□ -0.65
COL28A1-205ENST00000453441 SF3B3Q15393 1217 aaKnown RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 DZIP1LQ8IYY4 767 aaKnown RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 RPGRQ92834 1020 aaKnown RBP10.96□□□□□ -0.65
COL28A1-205ENST00000453441 FAM89AQ96GI7 184 aa10.96□□□□□ -0.65
COL28A1-205ENST00000453441 SRCAPQ6ZRS2 3230 aa10.96□□□□□ -0.66
COL28A1-205ENST00000453441 RTL9Q8NET4 1388 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 DPEP1P16444 411 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 PDE3AQ14432 1141 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 CCDC152Q4G0S7 254 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 SOGA3Q5TF21 947 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 UBE3BQ7Z3V4 1068 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 TMC4Q7Z404 712 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 ZNF454Q8N9F8 522 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 RBM17Q96I25 401 aaKnown RBP10.95□□□□□ -0.66
COL28A1-205ENST00000453441 CRAMP1Q96RY5 1269 aa10.95□□□□□ -0.66
COL28A1-205ENST00000453441 COL11A2P13942 1736 aaPredicted RBP10.95□□□□□ -0.66
COL28A1-205ENST00000453441 TNRC6CQ9HCJ0 1690 aaKnown RBP10.95□□□□□ -0.66
COL28A1-205ENST00000453441 GNAI3P08754 354 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 CASP7P55210 303 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 CTSWP56202 376 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 GRIPAP1Q4V328 841 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 DALRD3Q5D0E6 543 aaKnown RBP10.94□□□□□ -0.66
COL28A1-205ENST00000453441 DDX46Q7L014 1031 aaKnown RBP10.94□□□□□ -0.66
COL28A1-205ENST00000453441 TTLL6Q8N841 843 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 NLGN2Q8NFZ4 835 aa10.94□□□□□ -0.66
COL28A1-205ENST00000453441 ARFGEF1Q9Y6D6 1849 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 A0A0G2JLW4 131 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 ARHGAP33O14559 1287 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 GRIN3BO60391 1043 aa10.93□□□□□ -0.66
COL28A1-205ENST00000453441 UBTFL1P0CB47 393 aaPredicted RBP10.93□□□□□ -0.66
COL28A1-205ENST00000453441 HCLS1P14317 486 aaPredicted RBP10.93□□□□□ -0.66
COL28A1-205ENST00000453441 KCNA3P22001 575 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms