RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 MPHOSPH8Q99549 860 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 PLA2G12BQ9BX93 195 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 BSDC1Q9NW68 430 aaPredicted RBP19.67■□□□□ 0.74
LIMS1-210ENST00000449684 C9orf78Q9NZ63 289 aaPredicted RBP19.67■□□□□ 0.74
LIMS1-210ENST00000449684 GPRC5DQ9NZD1 345 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 CHMP3Q9Y3E7 222 aa19.67■□□□□ 0.74
LIMS1-210ENST00000449684 MYH3P11055 1940 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 ECE2O60344 883 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 ITGA6P23229 1130 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 ATP2B4P23634 1241 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 MAP1SQ66K74 1059 aaPredicted RBP19.66■□□□□ 0.74
LIMS1-210ENST00000449684 DIEXFQ68CQ4 756 aaKnown RBP19.66■□□□□ 0.74
LIMS1-210ENST00000449684 CNTROBQ8N137 903 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 KLRG1Q96E93 195 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 SRCIN1Q9C0H9 1055 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 ADARB2Q9NS39 739 aaKnown RBP19.66■□□□□ 0.74
LIMS1-210ENST00000449684 DUOX1Q9NRD9 1551 aa19.66■□□□□ 0.74
LIMS1-210ENST00000449684 COL4A1P02462 1669 aa19.65■□□□□ 0.74
LIMS1-210ENST00000449684 YDJCA8MPS7 323 aa19.65■□□□□ 0.74
LIMS1-210ENST00000449684 CDCA7LQ96GN5 454 aa19.65■□□□□ 0.74
LIMS1-210ENST00000449684 RTL9Q8NET4 1388 aa19.65■□□□□ 0.74
LIMS1-210ENST00000449684 ANKRD18BA2A2Z9 1011 aa19.64■□□□□ 0.73
LIMS1-210ENST00000449684 H7C1D1 291 aa19.64■□□□□ 0.73
LIMS1-210ENST00000449684 GRM8O00222 908 aa19.64■□□□□ 0.73
LIMS1-210ENST00000449684 FAM161AQ3B820 660 aa19.64■□□□□ 0.73
LIMS1-210ENST00000449684 MINPP1Q9UNW1 487 aa19.64■□□□□ 0.73
LIMS1-210ENST00000449684 PSMD14O00487 310 aa19.63■□□□□ 0.73
LIMS1-210ENST00000449684 ALDH1L1O75891 902 aa19.63■□□□□ 0.73
LIMS1-210ENST00000449684 CSF1RP07333 972 aa19.63■□□□□ 0.73
LIMS1-210ENST00000449684 CASP7P55210 303 aa19.63■□□□□ 0.73
LIMS1-210ENST00000449684 IFIT5Q13325 482 aaKnown RBP19.63■□□□□ 0.73
LIMS1-210ENST00000449684 MRPL50Q8N5N7 158 aaKnown RBP19.63■□□□□ 0.73
LIMS1-210ENST00000449684 CREBZFQ9NS37 354 aa19.63■□□□□ 0.73
LIMS1-210ENST00000449684 CNOT7Q9UIV1 285 aaKnown RBP19.63■□□□□ 0.73
LIMS1-210ENST00000449684 TAF7LQ5H9L4 462 aa19.62■□□□□ 0.73
LIMS1-210ENST00000449684 SSH1Q8WYL5 1049 aa19.62■□□□□ 0.73
LIMS1-210ENST00000449684 ZBTB12Q9Y330 459 aaPredicted RBP19.62■□□□□ 0.73
LIMS1-210ENST00000449684 PTPRCP08575 1304 aa19.61■□□□□ 0.73
LIMS1-210ENST00000449684 TMEM88BA6NKF7 163 aa19.61■□□□□ 0.73
LIMS1-210ENST00000449684 ITGBL1O95965 494 aaPredicted RBP19.61■□□□□ 0.73
LIMS1-210ENST00000449684 KCNJ4P48050 445 aa19.61■□□□□ 0.73
LIMS1-210ENST00000449684 ANKRD2Q9GZV1 360 aa19.61■□□□□ 0.73
LIMS1-210ENST00000449684 SMC4Q9NTJ3 1288 aa19.61■□□□□ 0.73
LIMS1-210ENST00000449684 LTBP1Q14766 1721 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 PASKQ96RG2 1323 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 RPS12P25398 132 aaKnown RBP19.6■□□□□ 0.73
LIMS1-210ENST00000449684 CCT4P50991 539 aaKnown RBP19.6■□□□□ 0.73
LIMS1-210ENST00000449684 CCDC57Q2TAC2 916 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 ALDH1L2Q3SY69 923 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 LMBR1LQ6UX01 489 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 MICALL2Q8IY33 904 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 DPF2Q92785 391 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 SPEF2Q9C093 1822 aa19.6■□□□□ 0.73
LIMS1-210ENST00000449684 FOXO4P98177 505 aa19.59■□□□□ 0.73
LIMS1-210ENST00000449684 KCNQ5Q9NR82 932 aa19.59■□□□□ 0.73
LIMS1-210ENST00000449684 LEMD3Q9Y2U8 911 aa19.59■□□□□ 0.73
LIMS1-210ENST00000449684 ADAMTSL1Q8N6G6 1762 aa19.58■□□□□ 0.73
LIMS1-210ENST00000449684 MIER1Q8N108 512 aa19.58■□□□□ 0.72
LIMS1-210ENST00000449684 MKRN1Q9UHC7 482 aaKnown RBP19.58■□□□□ 0.72
LIMS1-210ENST00000449684 CT47B1P0C2W7 299 aaPredicted RBP19.57■□□□□ 0.72
LIMS1-210ENST00000449684 PODNQ7Z5L7 613 aa19.57■□□□□ 0.72
LIMS1-210ENST00000449684 FBXW7Q969H0 707 aa19.57■□□□□ 0.72
LIMS1-210ENST00000449684 ZNF804BA4D1E1 1349 aa19.56■□□□□ 0.72
LIMS1-210ENST00000449684 VIL1P09327 827 aaKnown RBP19.56■□□□□ 0.72
LIMS1-210ENST00000449684 CHRNDQ07001 517 aa19.56■□□□□ 0.72
LIMS1-210ENST00000449684 RBM26Q5T8P6 1007 aaKnown RBP19.56■□□□□ 0.72
LIMS1-210ENST00000449684 TRMT2AQ8IZ69 625 aaKnown RBP19.56■□□□□ 0.72
LIMS1-210ENST00000449684 ZC3H15Q8WU90 426 aaKnown RBP19.56■□□□□ 0.72
LIMS1-210ENST00000449684 CNNM1Q9NRU3 951 aa19.56■□□□□ 0.72
LIMS1-210ENST00000449684 MED23Q9ULK4 1368 aa19.56■□□□□ 0.72
LIMS1-210ENST00000449684 SHTN1A0MZ66 631 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 USP17L3A6NCW0 530 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 USP17L4A6NCW7 530 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 TBC1D10BQ4KMP7 808 aaPredicted RBP19.55■□□□□ 0.72
LIMS1-210ENST00000449684 EPHA10Q5JZY3 1008 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 LDHAL6AQ6ZMR3 332 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 USP17L1Q7RTZ2 530 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 SAMD7Q7Z3H4 446 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 JMYQ8N9B5 988 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 TRPM4Q8TD43 1214 aa19.55■□□□□ 0.72
LIMS1-210ENST00000449684 ABT1Q9ULW3 272 aaKnown RBP19.55■□□□□ 0.72
LIMS1-210ENST00000449684 WTIPA6NIX2 430 aaPredicted RBP19.54■□□□□ 0.72
LIMS1-210ENST00000449684 RSBN1LQ6PCB5 846 aaPredicted RBP19.54■□□□□ 0.72
LIMS1-210ENST00000449684 SUCLG2Q96I99 432 aa19.54■□□□□ 0.72
LIMS1-210ENST00000449684 COA1Q9GZY4 146 aa19.54■□□□□ 0.72
LIMS1-210ENST00000449684 TRAF5O00463 557 aa19.53■□□□□ 0.72
LIMS1-210ENST00000449684 PLIN1O60240 522 aa19.53■□□□□ 0.72
LIMS1-210ENST00000449684 NBPF7P0C2Y1 421 aaPredicted RBP19.53■□□□□ 0.72
LIMS1-210ENST00000449684 HIRAP54198 1017 aaPredicted RBP19.53■□□□□ 0.72
LIMS1-210ENST00000449684 AGBL3Q8NEM8 1001 aa19.53■□□□□ 0.72
LIMS1-210ENST00000449684 TAF5LO75529 589 aa19.52■□□□□ 0.72
LIMS1-210ENST00000449684 CDC37L1Q7L3B6 337 aa19.52■□□□□ 0.72
LIMS1-210ENST00000449684 HELBQ8NG08 1087 aaPredicted RBP19.52■□□□□ 0.72
LIMS1-210ENST00000449684 ZNF594Q96JF6 807 aaPredicted RBP19.52■□□□□ 0.72
LIMS1-210ENST00000449684 HNRNPUQ00839 825 aaKnown RBP eCLIP19.51■□□□□ 0.71
LIMS1-210ENST00000449684 KIF4BQ2VIQ3 1234 aa19.51■□□□□ 0.71
LIMS1-210ENST00000449684 DEFB115Q30KQ5 88 aa19.51■□□□□ 0.71
LIMS1-210ENST00000449684 PAXIP1Q6ZW49 1069 aaPredicted RBP19.51■□□□□ 0.71
LIMS1-210ENST00000449684 DCPSQ96C86 337 aaKnown RBP19.51■□□□□ 0.71
LIMS1-210ENST00000449684 GLIS2Q9BZE0 524 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms