RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 GSDMDP57764 484 aa13.58□□□□□ -0.24
SMPD4-209ENST00000439886 CCZ1BP86790 482 aa13.58□□□□□ -0.24
SMPD4-209ENST00000439886 CCZ1P86791 482 aaPredicted RBP13.58□□□□□ -0.24
SMPD4-209ENST00000439886 SEC62Q99442 399 aaKnown RBP13.58□□□□□ -0.24
SMPD4-209ENST00000439886 REREQ9P2R6 1566 aa13.58□□□□□ -0.24
SMPD4-209ENST00000439886 EFCAB6Q5THR3 1501 aa13.58□□□□□ -0.24
SMPD4-209ENST00000439886 TRIM66O15016 1216 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 RPS6KB1P23443 525 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 USP28Q96RU2 1077 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 PPRC1Q5VV67 1664 aaKnown RBP13.57□□□□□ -0.24
SMPD4-209ENST00000439886 ICE2Q659A1 982 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 MRFAP1L1Q96HT8 127 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 NEK1Q96PY6 1258 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 CLSTN1O94985 981 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 APOBRQ0VD83 1088 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 IQCB1Q15051 598 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 RNF217Q8TC41 542 aa13.57□□□□□ -0.24
SMPD4-209ENST00000439886 CHGBP05060 677 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 SATB1Q01826 763 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 SMARCE1Q969G3 411 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 FAM212AQ96EL1 285 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 EYA1Q99502 592 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 GOLPH3LQ9H4A5 285 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 NLRP6P59044 892 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 NECTIN1Q15223 517 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 ZSCAN26Q16670 478 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 DNAJC21Q5F1R6 531 aaKnown RBP13.56□□□□□ -0.24
SMPD4-209ENST00000439886 ZNF396Q96N95 335 aaPredicted RBP13.56□□□□□ -0.24
SMPD4-209ENST00000439886 TLR7Q9NYK1 1049 aaKnown RBP13.56□□□□□ -0.24
SMPD4-209ENST00000439886 ELP1O95163 1332 aa13.56□□□□□ -0.24
SMPD4-209ENST00000439886 KARSQ15046 597 aaKnown RBP13.55□□□□□ -0.24
SMPD4-209ENST00000439886 DPCR1Q3MIW9 517 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 NYAP1Q6ZVC0 841 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 ZNF589Q86UQ0 364 aaPredicted RBP13.55□□□□□ -0.24
SMPD4-209ENST00000439886 AK7Q96M32 723 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 SETBP1Q9Y6X0 1596 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 NRXN1Q9ULB1 1477 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 CTAGE5O15320 804 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 CYP2C19P33261 490 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 E4F1Q66K89 784 aaPredicted RBP13.55□□□□□ -0.24
SMPD4-209ENST00000439886 CWC15Q9P013 229 aaKnown RBP13.55□□□□□ -0.24
SMPD4-209ENST00000439886 CD163L1Q9NR16 1453 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 ACEP12821 1306 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 LEKR1Q6ZMV7 388 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 SYNE3Q6ZMZ3 975 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 TXLNBQ8N3L3 684 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 NEUROD6Q96NK8 337 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 SLC26A8Q96RN1 970 aa13.55□□□□□ -0.24
SMPD4-209ENST00000439886 ADGRB3O60242 1522 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 SLC3A2P08195 630 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 PLA2G4AP47712 749 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 SMC1AQ14683 1233 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 TM6SF1Q9BZW5 370 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 UHRF1BP1LA0JNW5 1464 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 AOX1Q06278 1338 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 MARCKSP29966 332 aaPredicted RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 SART3Q15020 963 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 LMOD2Q6P5Q4 547 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 MAP3K2Q9Y2U5 619 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 FHOD1Q9Y613 1164 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 MAP2P11137 1827 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 TTC21BQ7Z4L5 1316 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 CAVIN2O95810 425 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 CASQ1P31415 396 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 UBASH3AP57075 661 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 TOB2Q14106 344 aaPredicted RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 DDX46Q7L014 1031 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 CPLX3Q8WVH0 158 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 CCDC102AQ96A19 550 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 ARFGAP3Q9NP61 516 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 VPS18Q9P253 973 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 PUF60Q9UHX1 559 aaKnown RBP13.54□□□□□ -0.24
SMPD4-209ENST00000439886 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
SMPD4-209ENST00000439886 ZCCHC11Q5TAX3 1644 aaKnown RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 TTC21AQ8NDW8 1320 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 PTPDC1A2A3K4 754 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 KCNQ3O43525 872 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 TOP1P11387 765 aaKnown RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 ATP1A3P13637 1013 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 FAM160A1Q05DH4 1040 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 DHX40Q8IX18 779 aaKnown RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 EAF2Q96CJ1 260 aaPredicted RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 CPSF1Q10570 1443 aaKnown RBP13.53□□□□□ -0.24
SMPD4-209ENST00000439886 ASXL2Q76L83 1435 aa13.53□□□□□ -0.24
SMPD4-209ENST00000439886 HIP1O00291 1037 aa13.52□□□□□ -0.24
SMPD4-209ENST00000439886 ETF1P62495 437 aaKnown RBP13.52□□□□□ -0.24
SMPD4-209ENST00000439886 MAP2K1Q02750 393 aaPredicted RBP13.52□□□□□ -0.24
SMPD4-209ENST00000439886 ARMCX5Q6P1M9 558 aa13.52□□□□□ -0.24
SMPD4-209ENST00000439886 CTR9Q6PD62 1173 aa13.52□□□□□ -0.24
SMPD4-209ENST00000439886 CCDC150Q8NCX0 1101 aa13.52□□□□□ -0.24
SMPD4-209ENST00000439886 MRPS27Q92552 414 aaKnown RBP13.52□□□□□ -0.24
SMPD4-209ENST00000439886 MAP4K1Q92918 833 aa13.52□□□□□ -0.24
SMPD4-209ENST00000439886 ZSCAN16Q9H4T2 348 aaPredicted RBP13.52□□□□□ -0.24
SMPD4-209ENST00000439886 CPLX1O14810 134 aa13.52□□□□□ -0.25
SMPD4-209ENST00000439886 RESTQ13127 1097 aa13.52□□□□□ -0.25
SMPD4-209ENST00000439886 IL17REQ8NFR9 667 aa13.52□□□□□ -0.25
SMPD4-209ENST00000439886 TTC41PQ6P2S7 1318 aa13.52□□□□□ -0.25
SMPD4-209ENST00000439886 MYO3AQ8NEV4 1616 aa13.52□□□□□ -0.25
SMPD4-209ENST00000439886 ATP2B1P20020 1258 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms