RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 DRC1Q96MC2 740 aa19.66■□□□□ 0.74
PTPRF-209ENST00000438120 UTP14AQ9BVJ6 771 aaKnown RBP19.66■□□□□ 0.74
PTPRF-209ENST00000438120 CUL7Q14999 1698 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 NEMFO60524 1076 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 NAPAP54920 295 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 TRERF1Q96PN7 1200 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 AKR1B10O60218 316 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 DDB1Q16531 1140 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 RBM26Q5T8P6 1007 aaKnown RBP19.65■□□□□ 0.74
PTPRF-209ENST00000438120 KDM5BQ9UGL1 1544 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 IL15P40933 162 aaPredicted RBP19.65■□□□□ 0.74
PTPRF-209ENST00000438120 MAATS1Q7Z4T9 603 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 GCOM1H8Y6P7 765 aaPredicted RBP19.65■□□□□ 0.74
PTPRF-209ENST00000438120 MYZAPP0CAP1 466 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 DNM1Q05193 864 aaKnown RBP19.65■□□□□ 0.74
PTPRF-209ENST00000438120 RGS22Q8NE09 1264 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 TTC21AQ8NDW8 1320 aa19.65■□□□□ 0.74
PTPRF-209ENST00000438120 UBAP1LF5GYI3 381 aa19.64■□□□□ 0.74
PTPRF-209ENST00000438120 RXRAP19793 462 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 VEZTQ9HBM0 779 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 COMMD10Q9Y6G5 202 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 MAGEB6P1A0A0J9YX57 407 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 RIMBP2O15034 1052 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 CALM1P0DP23 149 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 CALM2P0DP24 149 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 CALM3P0DP25 149 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 KLHL40Q2TBA0 621 aa19.64■□□□□ 0.73
PTPRF-209ENST00000438120 CGNQ9P2M7 1197 aaKnown RBP19.64■□□□□ 0.73
PTPRF-209ENST00000438120 CEP135Q66GS9 1140 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 PYM1Q9BRP8 204 aaKnown RBP19.63■□□□□ 0.73
PTPRF-209ENST00000438120 NAA15Q9BXJ9 866 aaKnown RBP19.63■□□□□ 0.73
PTPRF-209ENST00000438120 CNNM2Q9H8M5 875 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 POLKQ9UBT6 870 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 PTGS1P23219 599 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 DHX58Q96C10 678 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 ALDH1L1O75891 902 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 TFCP2Q12800 502 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 MAGEB6Q8N7X4 407 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 ERMNQ8TAM6 284 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 DMRT2Q9Y5R5 561 aa19.63■□□□□ 0.73
PTPRF-209ENST00000438120 RRP9O43818 475 aaKnown RBP19.63■□□□□ 0.73
PTPRF-209ENST00000438120 CTR9Q6PD62 1173 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 DACT1Q9NYF0 836 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 SPAG5Q96R06 1193 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 TAOK3Q9H2K8 898 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 APOBRQ0VD83 1088 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 RMND1Q9NWS8 449 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 NSFL1CQ9UNZ2 370 aaKnown RBP19.62■□□□□ 0.73
PTPRF-209ENST00000438120 NPHP3Q7Z494 1330 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 DNAJC25Q9H1X3 360 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 THOC2Q8NI27 1593 aaKnown RBP19.62■□□□□ 0.73
PTPRF-209ENST00000438120 ASIC1P78348 528 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 PLS1Q14651 629 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 OGFOD1Q8N543 542 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 AOPEPQ8N6M6 819 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 SMARCC2Q8TAQ2 1214 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 LRRC27Q9C0I9 530 aa19.62■□□□□ 0.73
PTPRF-209ENST00000438120 ZNF608Q9ULD9 1512 aaPredicted RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 CA8P35219 290 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 NCKAP5LQ9HCH0 1330 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 SMC1AQ14683 1233 aaKnown RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 MRPS27Q92552 414 aaKnown RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 MCM9Q9NXL9 1143 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 LRSAM1Q6UWE0 723 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 ZGPATQ8N5A5 531 aaKnown RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 SMARCC1Q92922 1105 aaPredicted RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 ARID5AQ03989 594 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 ZNF804AQ7Z570 1209 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 TMTC2Q8N394 836 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 ZBTB9Q96C00 473 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 RALGAPBQ86X10 1494 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 IRS4O14654 1257 aaPredicted RBP19.61■□□□□ 0.73
PTPRF-209ENST00000438120 KCNG4Q8TDN1 519 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 SYNCQ9H7C4 482 aa19.61■□□□□ 0.73
PTPRF-209ENST00000438120 FAM107BQ9H098 131 aa19.6■□□□□ 0.73
PTPRF-209ENST00000438120 HDAC9Q9UKV0 1011 aa19.6■□□□□ 0.73
PTPRF-209ENST00000438120 IL2RBP14784 551 aa19.6■□□□□ 0.73
PTPRF-209ENST00000438120 PLIN2Q99541 437 aa19.6■□□□□ 0.73
PTPRF-209ENST00000438120 CLEC11AQ9Y240 323 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 PHACTR2O75167 634 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 F13A1P00488 732 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 GTF2F1P35269 517 aaKnown RBP eCLIP19.59■□□□□ 0.73
PTPRF-209ENST00000438120 ZFP91Q96JP5 570 aaPredicted RBP19.59■□□□□ 0.73
PTPRF-209ENST00000438120 ZKSCAN3Q9BRR0 538 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 PHACTR3Q96KR7 559 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 MAP3K1Q13233 1512 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 TERF1P54274 439 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 AKNAD1Q5T1N1 836 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 INCENPQ9NQS7 918 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 ASXL1Q8IXJ9 1541 aa19.59■□□□□ 0.73
PTPRF-209ENST00000438120 RLBP1P12271 317 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 PPP4R3BQ5MIZ7 849 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 TBC1D5Q92609 795 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 VTI1AQ96AJ9 217 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 RNF113AO15541 343 aaKnown RBP19.58■□□□□ 0.73
PTPRF-209ENST00000438120 GJC1P36383 396 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 TNNI2P48788 182 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 ZBTB21Q9ULJ3 1066 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 MRVI1Q9Y6F6 885 aa19.58■□□□□ 0.73
PTPRF-209ENST00000438120 LMAN1P49257 510 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms