RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 FPGT-TNNI3KV9GXZ4 949 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 HOXA10P31260 410 aaPredicted RBP28.28■■■□□ 2.12
CPSF4-204ENST00000436336 GRAPQ13588 217 aa28.28■■■□□ 2.12
CPSF4-204ENST00000436336 GRAPLQ8TC17 118 aaPredicted RBP28.28■■■□□ 2.12
CPSF4-204ENST00000436336 IFIT2P09913 472 aaKnown RBP28.27■■■□□ 2.12
CPSF4-204ENST00000436336 MX1P20591 662 aa28.27■■■□□ 2.12
CPSF4-204ENST00000436336 OSBPL3Q9H4L5 887 aa28.27■■■□□ 2.12
CPSF4-204ENST00000436336 ZNF609O15014 1411 aa28.27■■■□□ 2.12
CPSF4-204ENST00000436336 PSDA5PKW4 1024 aaPredicted RBP28.26■■■□□ 2.12
CPSF4-204ENST00000436336 AKAP2Q9Y2D5 859 aa28.26■■■□□ 2.12
CPSF4-204ENST00000436336 C10orf71Q711Q0 1435 aa28.26■■■□□ 2.11
CPSF4-204ENST00000436336 PDE1AP54750 535 aa28.26■■■□□ 2.11
CPSF4-204ENST00000436336 VGLL2Q8N8G2 317 aa28.26■■■□□ 2.11
CPSF4-204ENST00000436336 CRAMP1Q96RY5 1269 aa28.26■■■□□ 2.11
CPSF4-204ENST00000436336 CACNA1SQ13698 1873 aa28.26■■■□□ 2.11
CPSF4-204ENST00000436336 ARAP2Q8WZ64 1704 aa28.25■■■□□ 2.11
CPSF4-204ENST00000436336 SRGNP10124 158 aa28.25■■■□□ 2.11
CPSF4-204ENST00000436336 STAP2Q9UGK3 403 aa28.25■■■□□ 2.11
CPSF4-204ENST00000436336 DLEC1Q9Y238 1755 aa28.25■■■□□ 2.11
CPSF4-204ENST00000436336 PDE8BO95263 885 aa28.24■■■□□ 2.11
CPSF4-204ENST00000436336 POLD1P28340 1107 aa28.24■■■□□ 2.11
CPSF4-204ENST00000436336 ATF5Q9Y2D1 282 aaPredicted RBP28.24■■■□□ 2.11
CPSF4-204ENST00000436336 NPR1P16066 1061 aa28.23■■■□□ 2.11
CPSF4-204ENST00000436336 CCDC8Q9H0W5 538 aaPredicted RBP28.23■■■□□ 2.11
CPSF4-204ENST00000436336 AOX1Q06278 1338 aa28.23■■■□□ 2.11
CPSF4-204ENST00000436336 TTC41PQ6P2S7 1318 aa28.22■■■□□ 2.11
CPSF4-204ENST00000436336 CHRNDQ07001 517 aa28.22■■■□□ 2.11
CPSF4-204ENST00000436336 A0A1B0GUL7 405 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 MASTLQ96GX5 879 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 GPATCH3Q96I76 525 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 MINPP1Q9UNW1 487 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 LRRC37AA6NMS7 1700 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 BBOX1O75936 387 aa28.21■■■□□ 2.11
CPSF4-204ENST00000436336 H0YIN7 160 aa28.2■■■□□ 2.1
CPSF4-204ENST00000436336 ALDH1B1P30837 517 aa28.2■■■□□ 2.1
CPSF4-204ENST00000436336 ATP2B3Q16720 1220 aa28.2■■■□□ 2.1
CPSF4-204ENST00000436336 C2CD5Q86YS7 1000 aa28.2■■■□□ 2.1
CPSF4-204ENST00000436336 NEUROD6Q96NK8 337 aa28.2■■■□□ 2.1
CPSF4-204ENST00000436336 TLR7Q9NYK1 1049 aaKnown RBP28.2■■■□□ 2.1
CPSF4-204ENST00000436336 DBNLQ9UJU6 430 aaKnown RBP28.2■■■□□ 2.1
CPSF4-204ENST00000436336 TIMM10P62072 90 aa28.19■■■□□ 2.1
CPSF4-204ENST00000436336 PUM3Q15397 648 aaKnown RBP28.19■■■□□ 2.1
CPSF4-204ENST00000436336 TTC22Q5TAA0 569 aa28.19■■■□□ 2.1
CPSF4-204ENST00000436336 HELBQ8NG08 1087 aaPredicted RBP28.19■■■□□ 2.1
CPSF4-204ENST00000436336 ECHDC1Q9NTX5 307 aa28.19■■■□□ 2.1
CPSF4-204ENST00000436336 AK9Q5TCS8 1911 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 BMP2KLQ5H9B9 411 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 TMC4Q7Z404 712 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 ANKRD2Q9GZV1 360 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 STYK1Q6J9G0 422 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 DBNDD2Q9BQY9 259 aa28.18■■■□□ 2.1
CPSF4-204ENST00000436336 TAF5LO75529 589 aa28.17■■■□□ 2.1
CPSF4-204ENST00000436336 FGFR2P21802 821 aa28.17■■■□□ 2.1
CPSF4-204ENST00000436336 LPIN2Q92539 896 aa28.17■■■□□ 2.1
CPSF4-204ENST00000436336 SGIP1Q9BQI5 828 aa28.17■■■□□ 2.1
CPSF4-204ENST00000436336 ERC2O15083 957 aa28.16■■■□□ 2.1
CPSF4-204ENST00000436336 TSHZ3Q63HK5 1081 aa28.16■■■□□ 2.1
CPSF4-204ENST00000436336 PI4K2BQ8TCG2 481 aa28.16■■■□□ 2.1
CPSF4-204ENST00000436336 KIAA1551Q9HCM1 1747 aa28.15■■■□□ 2.1
CPSF4-204ENST00000436336 GLRX3O76003 335 aaKnown RBP28.15■■■□□ 2.1
CPSF4-204ENST00000436336 GSPT1P15170 499 aaKnown RBP28.15■■■□□ 2.1
CPSF4-204ENST00000436336 XAGE2Q96GT9 111 aa28.15■■■□□ 2.1
CPSF4-204ENST00000436336 PPEF1O14829 653 aaPredicted RBP28.14■■■□□ 2.1
CPSF4-204ENST00000436336 SLC5A1P13866 664 aa28.14■■■□□ 2.1
CPSF4-204ENST00000436336 ZNF622Q969S3 477 aaKnown RBP eCLIP28.14■■■□□ 2.1
CPSF4-204ENST00000436336 UBE4AQ14139 1066 aa28.13■■■□□ 2.09
CPSF4-204ENST00000436336 SLX4Q8IY92 1834 aa28.13■■■□□ 2.09
CPSF4-204ENST00000436336 CHRNA5P30532 468 aa28.12■■■□□ 2.09
CPSF4-204ENST00000436336 IFIT1P09914 478 aaKnown RBP28.12■■■□□ 2.09
CPSF4-204ENST00000436336 PTGER2P43116 358 aa28.12■■■□□ 2.09
CPSF4-204ENST00000436336 SP8Q8IXZ3 490 aa28.12■■■□□ 2.09
CPSF4-204ENST00000436336 CNKSR1Q969H4 720 aa28.12■■■□□ 2.09
CPSF4-204ENST00000436336 LTBP1Q14766 1721 aa28.11■■■□□ 2.09
CPSF4-204ENST00000436336 ATP5JP18859 108 aa28.11■■■□□ 2.09
CPSF4-204ENST00000436336 ADORA1P30542 326 aa28.11■■■□□ 2.09
CPSF4-204ENST00000436336 GORABQ5T7V8 394 aa28.11■■■□□ 2.09
CPSF4-204ENST00000436336 CCDC158Q5M9N0 1113 aa28.1■■■□□ 2.09
CPSF4-204ENST00000436336 ATP6V0A2Q9Y487 856 aa28.1■■■□□ 2.09
CPSF4-204ENST00000436336 XDHP47989 1333 aa28.1■■■□□ 2.09
CPSF4-204ENST00000436336 SNAP23O00161 211 aa28.09■■■□□ 2.09
CPSF4-204ENST00000436336 TGFB2P61812 414 aa28.09■■■□□ 2.09
CPSF4-204ENST00000436336 ANKIB1Q9P2G1 1089 aa28.09■■■□□ 2.09
CPSF4-204ENST00000436336 BRCA1P38398 1863 aaKnown RBP28.08■■■□□ 2.09
CPSF4-204ENST00000436336 KCNJ4P48050 445 aa28.08■■■□□ 2.09
CPSF4-204ENST00000436336 LEMD3Q9Y2U8 911 aa28.08■■■□□ 2.09
CPSF4-204ENST00000436336 AKAP11Q9UKA4 1901 aa28.08■■■□□ 2.09
CPSF4-204ENST00000436336 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.07■■■□□ 2.08
CPSF4-204ENST00000436336 SPON1Q9HCB6 807 aa28.07■■■□□ 2.08
CPSF4-204ENST00000436336 ZNF804BA4D1E1 1349 aa28.07■■■□□ 2.08
CPSF4-204ENST00000436336 SDSP20132 328 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 TTC39AQ5SRH9 613 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 PODXL2Q9NZ53 605 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 GPSM2P81274 684 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 PRPF40BQ6NWY9 871 aaKnown RBP28.06■■■□□ 2.08
CPSF4-204ENST00000436336 ZNF512BQ96KM6 892 aaPredicted RBP28.06■■■□□ 2.08
CPSF4-204ENST00000436336 TMX4Q9H1E5 349 aaPredicted RBP28.06■■■□□ 2.08
CPSF4-204ENST00000436336 BOLA2Q9H3K6 86 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 CD2APQ9Y5K6 639 aa28.06■■■□□ 2.08
CPSF4-204ENST00000436336 MYH13Q9UKX3 1938 aa28.05■■■□□ 2.08
CPSF4-204ENST00000436336 DPEP1P16444 411 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms