RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 ROBO1Q9Y6N7 1651 aa9.5□□□□□ -0.89
HPS4-205ENST00000429411 CABP4P57796 275 aa9.5□□□□□ -0.89
HPS4-205ENST00000429411 ISM2Q6H9L7 571 aa9.5□□□□□ -0.89
HPS4-205ENST00000429411 Q6ZUG5 572 aa9.5□□□□□ -0.89
HPS4-205ENST00000429411 KRT27Q7Z3Y8 459 aa9.5□□□□□ -0.89
HPS4-205ENST00000429411 CPLX1O14810 134 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 GIGYF1O75420 1035 aaPredicted RBP9.49□□□□□ -0.89
HPS4-205ENST00000429411 TIMM10P62072 90 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 VPS53Q5VIR6 699 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 ANKRD13DQ6ZTN6 518 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 TTC6Q86TZ1 520 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 ZNF589Q86UQ0 364 aaPredicted RBP9.49□□□□□ -0.89
HPS4-205ENST00000429411 DBNDD2Q9BQY9 259 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 TAF6LQ9Y6J9 622 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 TTC41PQ6P2S7 1318 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 DIP2AQ14689 1571 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 APBA3O96018 575 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 ZNF165P49910 485 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 ANKRD1Q15327 319 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 AMOTQ4VCS5 1084 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 LMBR1LQ6UX01 489 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 NEK1Q96PY6 1258 aa9.49□□□□□ -0.89
HPS4-205ENST00000429411 NCOA5Q9HCD5 579 aaKnown RBP9.49□□□□□ -0.89
HPS4-205ENST00000429411 TRMT1Q9NXH9 659 aaKnown RBP9.49□□□□□ -0.89
HPS4-205ENST00000429411 TYRO3Q06418 890 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 HS1BP3Q53T59 392 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 KIF3AQ9Y496 699 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 TNS3Q68CZ2 1445 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 OVOS2A0A0J9YW53 1432 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 BIN1O00499 593 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 KINO60870 393 aaKnown RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 EN1Q05925 392 aaPredicted RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 CDC42BPGQ6DT37 1551 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 OVOS2Q6IE36 1432 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 USP16Q9Y5T5 823 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 SETD1AO15047 1707 aaKnown RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 SASH1O94885 1247 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 POLR3DP05423 398 aaPredicted RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 ATP2B1P20020 1258 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 APOBRQ0VD83 1088 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 COL9A3Q14050 684 aaPredicted RBP9.48□□□□□ -0.89
HPS4-205ENST00000429411 PDLIM2Q96JY6 352 aa9.48□□□□□ -0.89
HPS4-205ENST00000429411 NRXN3Q9Y4C0 1643 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 ZNF500O60304 480 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 ALDH1L1O75891 902 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 LRMPQ12912 555 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 MCM5P33992 734 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 POLA2Q14181 598 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 OTUD7BQ6GQQ9 843 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 ZNF496Q96IT1 587 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 ZNF594Q96JF6 807 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 FTOQ9C0B1 505 aaKnown RBP eCLIP9.47□□□□□ -0.89
HPS4-205ENST00000429411 SCAND2PQ9GZW5 306 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 HMGN5P82970 282 aaKnown RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 DDX21Q9NR30 783 aaKnown RBP eCLIP9.47□□□□□ -0.89
HPS4-205ENST00000429411 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.47□□□□□ -0.89
HPS4-205ENST00000429411 ZHX1Q9UKY1 873 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 PYCARDQ9ULZ3 195 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 V9GYY5 206 aaPredicted RBP9.47□□□□□ -0.89
HPS4-205ENST00000429411 SALL3Q9BXA9 1300 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 DLG5Q8TDM6 1919 aa9.47□□□□□ -0.89
HPS4-205ENST00000429411 SMC2O95347 1197 aa9.46□□□□□ -0.89
HPS4-205ENST00000429411 EPHA10Q5JZY3 1008 aa9.46□□□□□ -0.89
HPS4-205ENST00000429411 ZNF790Q6PG37 636 aa9.46□□□□□ -0.89
HPS4-205ENST00000429411 CLIP2Q9UDT6 1046 aa9.46□□□□□ -0.89
HPS4-205ENST00000429411 STK38Q15208 465 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 ARHGEF25Q86VW2 580 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 CREBRFQ8IUR6 639 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 CCDC144CPQ8IYA2 1237 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 FAM200AQ8TCP9 573 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 TTC14Q96N46 770 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 ZSWIM6Q9HCJ5 1215 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 NRBP1Q9UHY1 535 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 AOX1Q06278 1338 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 DYNC1I1O14576 645 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 IFIT1P09914 478 aaKnown RBP9.46□□□□□ -0.9
HPS4-205ENST00000429411 RPS6KB1P23443 525 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 UVSSAQ2YD98 709 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 PPP4R3BQ5MIZ7 849 aa9.46□□□□□ -0.9
HPS4-205ENST00000429411 RALYLQ86SE5 291 aaKnown RBP9.46□□□□□ -0.9
HPS4-205ENST00000429411 RPAP1Q9BWH6 1393 aaPredicted RBP9.45□□□□□ -0.9
HPS4-205ENST00000429411 TECPR2O15040 1411 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 KNDC1Q76NI1 1749 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 KCNQ2O43526 872 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 NR1I2O75469 434 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 CCDC82Q8N4S0 544 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 GPATCH11Q8N954 259 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 MAP7D2Q96T17 732 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 DCCP43146 1447 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 DLC1Q96QB1 1528 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 SSH2Q76I76 1423 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 GTF2E1P29083 439 aaPredicted RBP9.45□□□□□ -0.9
HPS4-205ENST00000429411 PTF1AQ7RTS3 328 aa9.45□□□□□ -0.9
HPS4-205ENST00000429411 CCAR1Q8IX12 1150 aaKnown RBP9.45□□□□□ -0.9
HPS4-205ENST00000429411 ADCY9O60503 1353 aa9.44□□□□□ -0.9
HPS4-205ENST00000429411 HSP90AA4PQ58FG1 418 aa9.44□□□□□ -0.9
HPS4-205ENST00000429411 SYNE3Q6ZMZ3 975 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms