RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CYP21A2P08686 494 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 ZAP70P43403 619 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 LDHAL6AQ6ZMR3 332 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 Q6ZUG5 572 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 UBE2Q2Q8WVN8 375 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 RUFY2Q8WXA3 655 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 IL17RAQ96F46 866 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 ATG3Q9NT62 314 aa9.99□□□□□ -0.81
CD44-208ENST00000428726 PLEKHG2Q9H7P9 1386 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 CYP2E1P05181 493 aaPredicted RBP9.98□□□□□ -0.81
CD44-208ENST00000428726 CLCN1P35523 988 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 ATG9AQ7Z3C6 839 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 TTC41PQ6P2S7 1318 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 UBE2Q2LH0YL09 131 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 BRD1O95696 1058 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 KLHL40Q2TBA0 621 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 METTL24Q5JXM2 366 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 STOX1Q6ZVD7 989 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 ERC1Q8IUD2 1116 aa9.98□□□□□ -0.81
CD44-208ENST00000428726 R3HCC1Q9Y3T6 440 aaKnown RBP9.98□□□□□ -0.81
CD44-208ENST00000428726 USP42Q9H9J4 1324 aaKnown RBP9.97□□□□□ -0.81
CD44-208ENST00000428726 SCN11AQ9UI33 1791 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 ABCC6O95255 1503 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 NECTIN1Q15223 517 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 ANP32BQ92688 251 aaKnown RBP9.97□□□□□ -0.81
CD44-208ENST00000428726 MYL10Q9BUA6 226 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 FAM13BQ9NYF5 915 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 CEP126Q9P2H0 1117 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 SPC24Q8NBT2 197 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 TTC14Q96N46 770 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 MTMR7Q9Y216 660 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 UTYO14607 1347 aa9.97□□□□□ -0.81
CD44-208ENST00000428726 M0R2C6 588 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 EXOC5O00471 708 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 PTMAP06454 111 aaKnown RBP9.96□□□□□ -0.81
CD44-208ENST00000428726 FAM98CQ17RN3 349 aaKnown RBP9.96□□□□□ -0.81
CD44-208ENST00000428726 RRP12Q5JTH9 1297 aaKnown RBP9.96□□□□□ -0.81
CD44-208ENST00000428726 TTC39AQ5SRH9 613 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 CMTR1Q8N1G2 835 aaKnown RBP9.96□□□□□ -0.81
CD44-208ENST00000428726 PIBF1Q8WXW3 757 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 PAG1Q9NWQ8 432 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 PCDH11XQ9BZA7 1347 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 PCDH11YQ9BZA8 1340 aa9.96□□□□□ -0.81
CD44-208ENST00000428726 ITGA6P23229 1130 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 TNS3Q68CZ2 1445 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 OSBP2Q969R2 916 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 XAGE2Q96GT9 111 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 C8orf37Q96NL8 207 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 ZKSCAN3Q9BRR0 538 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 USP25Q9UHP3 1055 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 COL18A1P39060 1754 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 ISM2Q6H9L7 571 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 MIGA1Q8NAN2 632 aa9.96□□□□□ -0.82
CD44-208ENST00000428726 PUS7LQ9H0K6 701 aaKnown RBP9.96□□□□□ -0.82
CD44-208ENST00000428726 TCHHQ07283 1943 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 ZSCAN22P10073 491 aaPredicted RBP9.95□□□□□ -0.82
CD44-208ENST00000428726 MSNP26038 577 aaKnown RBP9.95□□□□□ -0.82
CD44-208ENST00000428726 ATP6V1AP38606 617 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 KIF6Q6ZMV9 814 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 MAP4K1Q92918 833 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 CRYBG1Q9Y4K1 1723 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 PHF14O94880 888 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 POLR3DP05423 398 aaPredicted RBP9.95□□□□□ -0.82
CD44-208ENST00000428726 IFIT5Q13325 482 aaKnown RBP9.95□□□□□ -0.82
CD44-208ENST00000428726 TOB2Q14106 344 aaPredicted RBP9.95□□□□□ -0.82
CD44-208ENST00000428726 TSC1Q92574 1164 aa9.95□□□□□ -0.82
CD44-208ENST00000428726 IRS4O14654 1257 aaPredicted RBP9.94□□□□□ -0.82
CD44-208ENST00000428726 ATP2B1P20020 1258 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 CASP7P55210 303 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 CUL4AQ13619 759 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 DZIP3Q86Y13 1208 aaKnown RBP9.94□□□□□ -0.82
CD44-208ENST00000428726 INTS4Q96HW7 963 aaKnown RBP9.94□□□□□ -0.82
CD44-208ENST00000428726 AIFM3Q96NN9 605 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 NEK1Q96PY6 1258 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 RPAP1Q9BWH6 1393 aaPredicted RBP9.94□□□□□ -0.82
CD44-208ENST00000428726 STRCP1A6NGW2 1772 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 H3BQV1 296 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 EYA2O00167 538 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 NPHP1O15259 732 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 LIG1P18858 919 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 PHKA1P46020 1223 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 IFFO2Q5TF58 517 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 SENP2Q9HC62 589 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 COPRSQ9NQ92 184 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 ABCF2Q9UG63 623 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 ZNF609O15014 1411 aa9.94□□□□□ -0.82
CD44-208ENST00000428726 hCG_1642624A0A1W2PR95 340 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 H7C1W4 665 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 F13A1P00488 732 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 MTMR6Q9Y217 621 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 GTF2E1P29083 439 aaPredicted RBP9.93□□□□□ -0.82
CD44-208ENST00000428726 TCIRG1Q13488 830 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 PTPN21Q16825 1174 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 C5P01031 1676 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 MRC1P22897 1456 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 CPDO75976 1380 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 MCMDC2Q4G0Z9 681 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 FAM184AQ8NB25 1140 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 CARD10Q9BWT7 1032 aa9.93□□□□□ -0.82
CD44-208ENST00000428726 ZSWIM6Q9HCJ5 1215 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms