RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 ERFEQ4G0M1 354 aa9.38□□□□□ -0.91
HMGN1-205ENST00000419378 MAFBQ9Y5Q3 323 aaPredicted RBP9.38□□□□□ -0.91
HMGN1-205ENST00000419378 IGSF1Q8N6C5 1336 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 TOGARAM1Q9Y4F4 1720 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 SKIP12755 728 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 SLFNL1Q499Z3 407 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 FAM174AQ8TBP5 190 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 PBXIP1Q96AQ6 731 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 PLEKHG2Q9H7P9 1386 aa9.37□□□□□ -0.91
HMGN1-205ENST00000419378 KAT6BQ8WYB5 2073 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 LRP5O75197 1615 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 PAPPAQ13219 1627 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 SKOR1P84550 965 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 TXNRD1Q16881 649 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 NFATC2IPQ8NCF5 419 aa9.36□□□□□ -0.91
HMGN1-205ENST00000419378 CYP27B1O15528 508 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 RPIAP49247 311 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 MTHFSP49914 203 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 CNGB1Q14028 1251 aaPredicted RBP9.35□□□□□ -0.91
HMGN1-205ENST00000419378 RNF135Q8IUD6 432 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 SYTL4Q96C24 671 aaPredicted RBP9.35□□□□□ -0.91
HMGN1-205ENST00000419378 SLC10A4Q96EP9 437 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 C1QTNF2Q9BXJ5 285 aa9.35□□□□□ -0.91
HMGN1-205ENST00000419378 COL3A1P02461 1466 aaPredicted RBP9.34□□□□□ -0.91
HMGN1-205ENST00000419378 IL13P35225 146 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 LIAT1Q6ZQX7 453 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 AEBP1Q8IUX7 1158 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 PHTF2Q8N3S3 785 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 SPG7Q9UQ90 795 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 KDRP35968 1356 aa9.34□□□□□ -0.91
HMGN1-205ENST00000419378 LY75O60449 1722 aa9.34□□□□□ -0.92
HMGN1-205ENST00000419378 USP17L5A8MUK1 530 aa9.33□□□□□ -0.92
HMGN1-205ENST00000419378 GIGYF1O75420 1035 aaPredicted RBP9.33□□□□□ -0.92
HMGN1-205ENST00000419378 WNT7BP56706 349 aa9.33□□□□□ -0.92
HMGN1-205ENST00000419378 DEPDC4Q8N2C3 294 aa9.33□□□□□ -0.92
HMGN1-205ENST00000419378 ITGB4P16144 1822 aa9.33□□□□□ -0.92
HMGN1-205ENST00000419378 CASZ1Q86V15 1759 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 USP17L3A6NCW0 530 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 USP17L4A6NCW7 530 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 CD2BP2O95400 341 aaKnown RBP9.32□□□□□ -0.92
HMGN1-205ENST00000419378 PHKG2P15735 406 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 SULT6B1Q6IMI4 303 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 USP17L2Q6R6M4 530 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 USP17L1Q7RTZ2 530 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 RETREG2Q8NC44 543 aa9.32□□□□□ -0.92
HMGN1-205ENST00000419378 EMID1Q96A84 441 aaPredicted RBP9.32□□□□□ -0.92
HMGN1-205ENST00000419378 TSGA10IPQ3SY00 556 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 SLC27A3Q5K4L6 730 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 IFFO2Q5TF58 517 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 TRMT44Q8IYL2 757 aaKnown RBP9.31□□□□□ -0.92
HMGN1-205ENST00000419378 IFNL2Q8IZJ0 200 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 PLPP7Q8NBV4 271 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 LRRC4BQ9NT99 713 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 STK32BQ9NY57 414 aa9.31□□□□□ -0.92
HMGN1-205ENST00000419378 PALLDQ8WX93 1383 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 DIAPH1O60610 1272 aaKnown RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 PDIA4P13667 645 aaKnown RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 VARSP26640 1264 aaKnown RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 SLC15A2Q16348 729 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 ZNF827Q17R98 1081 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 AMOTQ4VCS5 1084 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 PLEKHO1Q53GL0 409 aaPredicted RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 RC3H1Q5TC82 1133 aaKnown RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 ZNF530Q6P9A1 599 aaPredicted RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 MPRIPQ6WCQ1 1025 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 PLEKHM2Q8IWE5 1019 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 EHBP1Q8NDI1 1231 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 CCDC85AQ96PX6 553 aaPredicted RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 VRTNQ9H8Y1 702 aa9.3□□□□□ -0.92
HMGN1-205ENST00000419378 KDM6AO15550 1401 aaPredicted RBP9.3□□□□□ -0.92
HMGN1-205ENST00000419378 HMOX1P09601 288 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 KCNQ4P56696 695 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 NCOA4Q13772 614 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 NBPF20Q3BBV1 942 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 PIGBQ92521 554 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 PDGFDQ9GZP0 370 aaPredicted RBP9.29□□□□□ -0.92
HMGN1-205ENST00000419378 CCNL1Q9UK58 526 aaPredicted RBP9.29□□□□□ -0.92
HMGN1-205ENST00000419378 C5P01031 1676 aa9.29□□□□□ -0.92
HMGN1-205ENST00000419378 QSER1Q2KHR3 1735 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 HSP90AB1P08238 724 aaKnown RBP9.28□□□□□ -0.92
HMGN1-205ENST00000419378 PPP2R1AP30153 589 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 SLC19A1P41440 591 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 TMOD3Q9NYL9 352 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 PLA2G2EQ9NZK7 142 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 CDV3Q9UKY7 258 aaKnown RBP9.28□□□□□ -0.92
HMGN1-205ENST00000419378 TUBGCP6Q96RT7 1819 aa9.28□□□□□ -0.92
HMGN1-205ENST00000419378 TAF1LQ8IZX4 1826 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 ESPNB1AK53 854 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 U2SURPO15042 1029 aaKnown RBP9.27□□□□□ -0.93
HMGN1-205ENST00000419378 MAP7D1Q3KQU3 841 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 C1orf141Q5JVX7 400 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 RNF20Q5VTR2 975 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 TRAF7Q6Q0C0 670 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 SMARCC1Q92922 1105 aaPredicted RBP9.27□□□□□ -0.93
HMGN1-205ENST00000419378 DCAF5Q96JK2 942 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 CFAP53Q96M91 514 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 KCTD15Q96SI1 283 aaPredicted RBP9.27□□□□□ -0.93
HMGN1-205ENST00000419378 MKRN1Q9UHC7 482 aaKnown RBP9.27□□□□□ -0.93
HMGN1-205ENST00000419378 DOLKQ9UPQ8 538 aa9.27□□□□□ -0.93
HMGN1-205ENST00000419378 ERVV-2B6SEH9 535 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms