RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 SERPINB2P05120 415 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 COL15A1P39059 1388 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 SSFA2P28290 1259 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 HIBADHP31937 336 aaKnown RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 CRACR2BQ8N4Y2 399 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 HMG20BQ9P0W2 317 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 MEGF6O75095 1541 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 DPP8Q6V1X1 898 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 TBC1D9Q6ZT07 1266 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 PXDNQ92626 1479 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 PDIA4P13667 645 aaKnown RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 CYP7A1P22680 504 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 KCNQ4P56696 695 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 IKQ13123 557 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 PLEKHM2Q8IWE5 1019 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 ZNF594Q96JF6 807 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-211ENST00000413186 MKNK2Q9HBH9 465 aa10.07□□□□□ -0.8
SYNE1-211ENST00000413186 IQSEC2Q5JU85 1478 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 MINDY4BA8MYZ0 360 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 TRIM28Q13263 835 aaKnown RBP10.06□□□□□ -0.8
SYNE1-211ENST00000413186 TRIM22Q8IYM9 498 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 PDRG1Q9NUG6 133 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 CDKL5O76039 1030 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 TSHZ3Q63HK5 1081 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 RASSF8Q8NHQ8 419 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 GNAT2P19087 354 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 TIMM10P62072 90 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 MCMDC2Q4G0Z9 681 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 SLC9C2Q5TAH2 1124 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 PRPF40BQ6NWY9 871 aaKnown RBP10.06□□□□□ -0.8
SYNE1-211ENST00000413186 BCCIPQ9P287 314 aaKnown RBP eCLIP10.06□□□□□ -0.8
SYNE1-211ENST00000413186 MON2Q7Z3U7 1717 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 RAD50Q92878 1312 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 CIAO1O76071 339 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 HLA-DOAP06340 250 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 SOGA3Q5TF21 947 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 WDR66Q8TBY9 1149 aa10.06□□□□□ -0.8
SYNE1-211ENST00000413186 CIZ1Q9ULV3 898 aaPredicted RBP10.06□□□□□ -0.8
SYNE1-211ENST00000413186 MSL1Q68DK7 614 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 IQCA1Q86XH1 822 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 C2CD5Q86YS7 1000 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 CERS3Q8IU89 383 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 KLHDC4Q8TBB5 520 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 XAGE2Q96GT9 111 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 IQSEC3Q9UPP2 1182 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 TNS2Q63HR2 1409 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 VPS37CA5D8V6 355 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 H7C1W4 665 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 BBOX1O75936 387 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 LDHBP07195 334 aaKnown RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 C16orf71Q8IYS4 520 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 ZNF444Q8N0Y2 327 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 MPNDQ8N594 471 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 RNF113AO15541 343 aaKnown RBP10.05□□□□□ -0.8
SYNE1-211ENST00000413186 ATP2B4P23634 1241 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 ATP2B2Q01814 1243 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 VPS53Q5VIR6 699 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 NALCNQ8IZF0 1738 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 DBNDD2Q9BQY9 259 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 MAST3O60307 1309 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 GPR108Q9NPR9 543 aa10.05□□□□□ -0.8
SYNE1-211ENST00000413186 MSNP26038 577 aaKnown RBP10.04□□□□□ -0.8
SYNE1-211ENST00000413186 PDE4BQ07343 736 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 CCDC24Q8N4L8 307 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 TBC1D22AQ8WUA7 517 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 CWC22Q9HCG8 908 aaKnown RBP10.04□□□□□ -0.8
SYNE1-211ENST00000413186 SLIT3O75094 1523 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 SLC4A3P48751 1232 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 SRP68Q9UHB9 627 aaKnown RBP10.04□□□□□ -0.8
SYNE1-211ENST00000413186 CASTP20810 708 aaKnown RBP10.04□□□□□ -0.8
SYNE1-211ENST00000413186 EIF5P55010 431 aaKnown RBP10.04□□□□□ -0.8
SYNE1-211ENST00000413186 PPP4R3BQ5MIZ7 849 aa10.04□□□□□ -0.8
SYNE1-211ENST00000413186 CDHR2Q9BYE9 1310 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 CNTNAP4Q9C0A0 1308 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 MED1Q15648 1581 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-211ENST00000413186 CCDC196A0A1B0GTZ2 297 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 NBPF26B4DH59 902 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 K7ELQ4 463 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-211ENST00000413186 RIMBP2O15034 1052 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 UBE4AQ14139 1066 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 NFKBIBQ15653 356 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 CC2D2BQ6DHV5 1058 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 NBPF10Q6P3W6 841 aaKnown RBP10.03□□□□□ -0.8
SYNE1-211ENST00000413186 NBPF15Q8N660 670 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 ESYT1Q9BSJ8 1104 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 ATP10DQ9P241 1426 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 ARHGEF1Q92888 912 aaKnown RBP10.03□□□□□ -0.8
SYNE1-211ENST00000413186 ISCA1Q9BUE6 129 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 GREM2Q9H772 168 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 MTMR7Q9Y216 660 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 CARMIL3Q8ND23 1372 aa10.03□□□□□ -0.8
SYNE1-211ENST00000413186 IBTKQ9P2D0 1353 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-211ENST00000413186 ATP5JP18859 108 aa10.02□□□□□ -0.8
SYNE1-211ENST00000413186 ERFEQ4G0M1 354 aa10.02□□□□□ -0.8
SYNE1-211ENST00000413186 CCDC178Q5BJE1 867 aa10.02□□□□□ -0.8
SYNE1-211ENST00000413186 FOXD4L5Q5VV16 416 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-211ENST00000413186 FOXD4L4Q8WXT5 416 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-211ENST00000413186 LEMD3Q9Y2U8 911 aa10.02□□□□□ -0.8
SYNE1-211ENST00000413186 KDM2BQ8NHM5 1336 aa10.02□□□□□ -0.8
SYNE1-211ENST00000413186 ANKRD26Q9UPS8 1709 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms