RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 USP25Q9UHP3 1055 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 TSPY2A6NKD2 308 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 ZSCAN22P10073 491 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 MCM5P33992 734 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 DHX8Q14562 1220 aaKnown RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 TPTE2Q6XPS3 522 aa13.06□□□□□ -0.32
PTPRF-204ENST00000412568 PUS3Q9BZE2 481 aaKnown RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 SCAND2PQ9GZW5 306 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-204ENST00000412568 TPM1P09493 284 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 IARSP41252 1262 aaKnown RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 METAP2P50579 478 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 USP48Q86UV5 1035 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 ZNF444Q8N0Y2 327 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 TFCP2L1Q9NZI6 479 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 SNX14Q9Y5W7 946 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 CCDC183Q5T5S1 534 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 NOC3LQ8WTT2 800 aaKnown RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 CCDC47Q96A33 483 aaKnown RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 MAP7D2Q96T17 732 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 ZBTB1Q9Y2K1 713 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 CDK12Q9NYV4 1490 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 TCIRG1Q13488 830 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 CTCFLQ8NI51 663 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-204ENST00000412568 ZHX3Q9H4I2 956 aa13.05□□□□□ -0.32
PTPRF-204ENST00000412568 ERVV-2B6SEH9 535 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 PRC1O43663 620 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 SSBP05455 408 aaKnown RBP eCLIP13.04□□□□□ -0.32
PTPRF-204ENST00000412568 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
PTPRF-204ENST00000412568 SOGA3Q5TF21 947 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 ANKRD20A12PQ8NF67 263 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 CD2BP2O95400 341 aaKnown RBP13.04□□□□□ -0.32
PTPRF-204ENST00000412568 SERPINC1P01008 464 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 ZAP70P43403 619 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 PTH1RQ03431 593 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 NAA16Q6N069 864 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-204ENST00000412568 NCOA5Q9HCD5 579 aaKnown RBP13.04□□□□□ -0.32
PTPRF-204ENST00000412568 RIMBP3CA6NJZ7 1639 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 RIMBP3BA6NNM3 1639 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 RIMBP3Q9UFD9 1639 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 PTPRMP28827 1452 aa13.04□□□□□ -0.32
PTPRF-204ENST00000412568 RIMBP2O15034 1052 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 ZFYP08048 801 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-204ENST00000412568 CRACR2BQ8N4Y2 399 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-204ENST00000412568 CCDC87Q9NVE4 849 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 SYT1P21579 422 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 PKP1Q13835 747 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 FSIP1Q8NA03 581 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 ARHGEF40Q8TER5 1519 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 A0A0D9SFI3 127 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 KLHL10Q6JEL2 608 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 USP21Q9UK80 565 aa13.03□□□□□ -0.32
PTPRF-204ENST00000412568 SLC27A2O14975 620 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 RUFY3Q7L099 469 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 GOLGA6L1Q8N7Z2 621 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 LMTK2Q8IWU2 1503 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 WDR17Q8IZU2 1322 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 PRDM1O75626 825 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 MBD4O95243 580 aa13.02□□□□□ -0.32
PTPRF-204ENST00000412568 PNPLA6Q8IY17 1366 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 CDK5RAP3Q96JB5 506 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 CARD10Q9BWT7 1032 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 RNF41Q9H4P4 317 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-204ENST00000412568 QRICH2Q9H0J4 1663 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 PDE8AO60658 829 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 TXLNAP40222 546 aa13.02□□□□□ -0.33
PTPRF-204ENST00000412568 SSRP1Q08945 709 aaKnown RBP13.02□□□□□ -0.33
PTPRF-204ENST00000412568 CCDC43Q96MW1 224 aaKnown RBP13.02□□□□□ -0.33
PTPRF-204ENST00000412568 RRP9O43818 475 aaKnown RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 ZBTB43O43298 467 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 PICALMQ13492 652 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 WTAPQ15007 396 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 OTUD7BQ6GQQ9 843 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 FAM177A1Q8N128 213 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 CLTCQ00610 1675 aaKnown RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 PDIA4P13667 645 aaKnown RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 MARCKSP29966 332 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 CATIPQ7Z7H3 387 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 KBTBD3Q8NAB2 608 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 PIGBQ92521 554 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 ARMT1Q9H993 441 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 NOL7Q9UMY1 257 aaKnown RBP13.01□□□□□ -0.33
PTPRF-204ENST00000412568 KDRP35968 1356 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 NEXMIFQ5QGS0 1516 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 CAMSAP1Q5T5Y3 1602 aa13.01□□□□□ -0.33
PTPRF-204ENST00000412568 IBTKQ9P2D0 1353 aaPredicted RBP13□□□□□ -0.33
PTPRF-204ENST00000412568 SPATA31A3Q5VYP0 1347 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 CCDC196A0A1B0GTZ2 297 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 B4E1Z4 1266 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 F13A1P00488 732 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 TRAPPC3LQ5T215 181 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 ADGRL3Q9HAR2 1447 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 UBE2HP62256 183 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 DHX32Q7L7V1 743 aaKnown RBP13□□□□□ -0.33
PTPRF-204ENST00000412568 SYNE4Q8N205 404 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 RAD50Q92878 1312 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 GPAA1O43292 621 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 NLRP5P59047 1200 aa13□□□□□ -0.33
PTPRF-204ENST00000412568 TRMT1LQ7Z2T5 733 aaKnown RBP13□□□□□ -0.33
PTPRF-204ENST00000412568 MTERF4Q7Z6M4 381 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms