RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 NETO1Q8TDF5 533 aa0.76□□□□□ -2.29
RNU4-88P-201ENST00000411220 ADAM11O75078 769 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 RGS9O75916 674 aaPredicted RBP0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 KRTAP21-2Q3LI59 83 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 TMEM259Q4ZIN3 620 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 PSAPL1Q6NUJ1 521 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 C9orf106Q8NAJ2 232 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 USP33Q8TEY7 942 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 KCTD3Q9Y597 815 aa0.75□□□□□ -2.29
RNU4-88P-201ENST00000411220 ESPNB1AK53 854 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 PTGDRQ13258 359 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 CLN3Q13286 438 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 NEUROD1Q13562 356 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 ZFYVE27Q5T4F4 411 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 SLC23A3Q6PIS1 610 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 PPP1R3FQ6ZSY5 799 aaPredicted RBP0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 METTL3Q86U44 580 aaKnown RBP0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 DCAF11Q8TEB1 546 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 KIRREL1Q96J84 757 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 CARD14Q9BXL6 1004 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 AHNAK2Q8IVF2 5795 aa0.74□□□□□ -2.29
RNU4-88P-201ENST00000411220 SOCS7O14512 581 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 CBSLP0DN79 551 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 LTKP29376 864 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 CBSP35520 551 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 WASP42768 502 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 GUCA2AQ02747 115 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 SEMA3FQ13275 785 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 UBXN11Q5T124 520 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 SH3BP5LQ7L8J4 393 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 SLC10A4Q96EP9 437 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 C8orf49Q96NF6 230 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 LRRC4CQ9HCJ2 640 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 LUC7LQ9NQ29 371 aaKnown RBP0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 HIF3AQ9Y2N7 669 aa0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 ZBTB32Q9Y2Y4 487 aaPredicted RBP0.73□□□□□ -2.29
RNU4-88P-201ENST00000411220 SLC22A31A6NKX4 558 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 HOXA2O43364 376 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 DPTQ07507 201 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 SHISA5Q8N114 240 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 WBP1Q96G27 269 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 MAP10Q9P2G4 905 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 CTNND2Q9UQB3 1225 aa0.72□□□□□ -2.29
RNU4-88P-201ENST00000411220 C6orf229H3BNL8 230 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 GPR37O15354 613 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 EFSO43281 561 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 CILPO75339 1184 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 CDK4P11802 303 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 DLG4P78352 724 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 GNASQ5JWF2 1037 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 DESI1Q6ICB0 168 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 TTC9BQ8N6N2 239 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 ADGRE3Q9BY15 652 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 SLC6A14Q9UN76 642 aa0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 AHNAKQ09666 5890 aaKnown RBP0.71□□□□□ -2.3
RNU4-88P-201ENST00000411220 SART1O43290 800 aaKnown RBP0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 ZNF76P36508 570 aa0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 CEBPAP49715 358 aaPredicted RBP0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 C4orf17Q53FE4 359 aa0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 KLHL22Q53GT1 634 aa0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 DVL3Q92997 716 aaPredicted RBP0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 ZBTB4Q9P1Z0 1013 aaPredicted RBP0.7□□□□□ -2.3
RNU4-88P-201ENST00000411220 A0A087X1B8 175 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 ERVH48-1M5A8F1 160 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 MAP4P27816 1152 aaKnown RBP0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 AFF3P51826 1226 aaKnown RBP0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 KRT71Q3SY84 523 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 ARMC2Q8NEN0 867 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 SLC30A3Q99726 388 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 CYLDQ9NQC7 956 aa0.69□□□□□ -2.3
RNU4-88P-201ENST00000411220 F12P00748 615 aaPredicted RBP0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 ITGB3P05106 788 aa0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 GTF2E1P29083 439 aaPredicted RBP0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 RAB15P59190 212 aa0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 TBC1D8BQ0IIM8 1120 aa0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 DUSP27Q5VZP5 1158 aa0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 C1orf216Q8TAB5 229 aa0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 SRA1Q9HD15 236 aaKnown RBP0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 TESQ9UGI8 421 aaKnown RBP0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 ATP1B4Q9UN42 357 aaPredicted RBP0.68□□□□□ -2.3
RNU4-88P-201ENST00000411220 A0A1W2PNR3 127 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 FAM170BA6NMN3 283 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 CD96P40200 585 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 SAMD5Q5TGI4 173 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 ANGEL2Q5VTE6 544 aaKnown RBP0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 CRELD2Q6UXH1 353 aaPredicted RBP0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 TBC1D9Q6ZT07 1266 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 ACAD11Q709F0 780 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 SAMD11Q96NU1 681 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 BBC3Q96PG8 261 aaPredicted RBP0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 UBE2OQ9C0C9 1292 aaKnown RBP0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 RYDENQ9NUL5 291 aaKnown RBP0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 NAGPAQ9UK23 515 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 TSC22D4Q9Y3Q8 395 aa0.67□□□□□ -2.3
RNU4-88P-201ENST00000411220 ATP4AP20648 1035 aa0.66□□□□□ -2.3
RNU4-88P-201ENST00000411220 PKD2Q13563 968 aa0.66□□□□□ -2.3
RNU4-88P-201ENST00000411220 TMEM214Q6NUQ4 689 aaKnown RBP0.66□□□□□ -2.3
RNU4-88P-201ENST00000411220 LARP1Q6PKG0 1096 aaKnown RBP0.66□□□□□ -2.3
RNU4-88P-201ENST00000411220 LYPD8Q6UX82 237 aa0.66□□□□□ -2.3
RNU4-88P-201ENST00000411220 ZAR1Q86SH2 424 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms