RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, human

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-205	ENST00000409810	GPSM2	P81274	684 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	RABL6	Q3YEC7	729 aa	Predicted RBP	13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	EPHA10	Q5JZY3	1008 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	SLC51A	Q86UW1	340 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	CLUAP1	Q96AJ1	413 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	BICC1	Q9H694	974 aa	Known RBP	13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	RCAN3	Q9UKA8	241 aa		13.68	□□□□□ -0.22
CHMP3-205	ENST00000409810	WDR90	Q96KV7	1748 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	UFL1	O94874	794 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	ATP2B4	P23634	1241 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	KIAA2012	Q0VF49	1180 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	AOC3	Q16853	763 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	WASHC4	Q2M389	1173 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	DZIP1L	Q8IYY4	767 aa	Known RBP	13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	ANKRD2	Q9GZV1	360 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	MINPP1	Q9UNW1	487 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	SCN4A	P35499	1836 aa		13.67	□□□□□ -0.22
CHMP3-205	ENST00000409810	FZD9	O00144	591 aa		13.66	□□□□□ -0.22
CHMP3-205	ENST00000409810	TBC1D16	Q8TBP0	767 aa		13.66	□□□□□ -0.22
CHMP3-205	ENST00000409810	KAZALD1	Q96I82	304 aa		13.66	□□□□□ -0.22
CHMP3-205	ENST00000409810	CNNM1	Q9NRU3	951 aa		13.66	□□□□□ -0.22
CHMP3-205	ENST00000409810	LDHAL6A	Q6ZMR3	332 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	TMEM57	Q8N5G2	664 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	ANKRD44	Q8N8A2	993 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	MEIS3	Q99687	375 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	POLL	Q9UGP5	575 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810	COL4A5	P29400	1685 aa		13.65	□□□□□ -0.22
CHMP3-205	ENST00000409810		G3V3G9	751 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	KCNJ4	P48050	445 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	CHRND	Q07001	517 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	DCAF8	Q5TAQ9	597 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	ITPRIP	Q8IWB1	547 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	ZNRF3	Q9ULT6	936 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	TNN	Q9UQP3	1299 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	LEMD3	Q9Y2U8	911 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	LRRFIP2	Q9Y608	721 aa	Known RBP	13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	ZNF541	Q9H0D2	1346 aa		13.64	□□□□□ -0.23
CHMP3-205	ENST00000409810	MED23	Q9ULK4	1368 aa		13.63	□□□□□ -0.23
CHMP3-205	ENST00000409810	PSME4	Q14997	1843 aa		13.63	□□□□□ -0.23
CHMP3-205	ENST00000409810	GPC2	Q8N158	579 aa		13.63	□□□□□ -0.23
CHMP3-205	ENST00000409810	NMRK2	Q9NPI5	230 aa		13.63	□□□□□ -0.23
CHMP3-205	ENST00000409810	IQCA1L	A6NCM1	817 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	RIMBP2	O15034	1052 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	DDN	O94850	711 aa	Predicted RBP	13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	GNAI2	P04899	355 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	VEGFA	P15692	232 aa	Predicted RBP	13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	ZNF594	Q96JF6	807 aa	Predicted RBP	13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	RRAGC	Q9HB90	399 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	ZNF804B	A4D1E1	1349 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	MROH5	Q6ZUA9	1318 aa		13.62	□□□□□ -0.23
CHMP3-205	ENST00000409810	TNIP1	Q15025	636 aa		13.61	□□□□□ -0.23
CHMP3-205	ENST00000409810	CIAPIN1	Q6FI81	312 aa		13.61	□□□□□ -0.23
CHMP3-205	ENST00000409810	CHMP4B	Q9H444	224 aa	Known RBP	13.61	□□□□□ -0.23
CHMP3-205	ENST00000409810	DBNDD1	Q9H9R9	158 aa		13.61	□□□□□ -0.23
CHMP3-205	ENST00000409810	GJA3	Q9Y6H8	435 aa		13.61	□□□□□ -0.23
CHMP3-205	ENST00000409810	SCN9A	Q15858	1988 aa		13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	KIF3C	O14782	793 aa		13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	ECE2	O60344	883 aa		13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	RLBP1	P12271	317 aa		13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	LMOD1	P29536	600 aa	Predicted RBP	13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	GPR101	Q96P66	508 aa	Predicted RBP	13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	FBXO3	Q9UK99	471 aa		13.6	□□□□□ -0.23
CHMP3-205	ENST00000409810	CXCL9	Q07325	125 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	DOK7	Q18PE1	504 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	METTL24	Q5JXM2	366 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	PODN	Q7Z5L7	613 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	PANK1	Q8TE04	598 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	DDX19B	Q9UMR2	479 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	RIPOR2	Q9Y4F9	1068 aa		13.59	□□□□□ -0.23
CHMP3-205	ENST00000409810	YDJC	A8MPS7	323 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	EYA2	O00167	538 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	SRGAP3	O43295	1099 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	PLIN1	O60240	522 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	TAF5L	O75529	589 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	RAD17	O75943	681 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	TOMM70	O94826	608 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	RFX5	P48382	616 aa	Predicted RBP	13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	MTX1	Q13505	466 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	UBE4A	Q14139	1066 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	PDE3A	Q14432	1141 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	MVP	Q14764	893 aa	Known RBP	13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	COA1	Q9GZY4	146 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	HACL1	Q9UJ83	578 aa		13.58	□□□□□ -0.24
CHMP3-205	ENST00000409810	ZBTB7B	O15156	539 aa	Predicted RBP	13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	CIAO1	O76071	339 aa		13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	PTPN12	Q05209	780 aa	Known RBP	13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	LRRC24	Q50LG9	513 aa		13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	C15orf52	Q6ZUT6	534 aa	Known RBP	13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	ZNF804A	Q7Z570	1209 aa		13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	HELB	Q8NG08	1087 aa	Predicted RBP	13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	KLHDC4	Q8TBB5	520 aa		13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	PUS3	Q9BZE2	481 aa	Known RBP	13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	COPRS	Q9NQ92	184 aa		13.57	□□□□□ -0.24
CHMP3-205	ENST00000409810	MYH13	Q9UKX3	1938 aa		13.56	□□□□□ -0.24
CHMP3-205	ENST00000409810	PSMD14	O00487	310 aa		13.56	□□□□□ -0.24
CHMP3-205	ENST00000409810	RPS12	P25398	132 aa	Known RBP	13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms