RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TYRO3Q06418 890 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 EHMT1Q9H9B1 1298 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 PPP1R1BQ9UD71 204 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-206ENST00000409809 NSD2O96028 1365 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 HMGB3O15347 200 aaKnown RBP14.59□□□□□ -0.07
COL6A3-206ENST00000409809 EXOSC9Q06265 439 aaKnown RBP14.59□□□□□ -0.07
COL6A3-206ENST00000409809 PDCD7Q8N8D1 485 aaKnown RBP14.59□□□□□ -0.07
COL6A3-206ENST00000409809 CETN3O15182 167 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 BICDL1Q6ZP65 573 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 SATB2Q9UPW6 733 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 CALCOCO2Q13137 446 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 WDR78Q5VTH9 848 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 SMARCC2Q8TAQ2 1214 aa14.59□□□□□ -0.07
COL6A3-206ENST00000409809 MICAL1Q8TDZ2 1067 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 NCOA2Q15596 1464 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 PFDN1O60925 122 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 ZNF445P59923 1031 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 SNCBQ16143 134 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 CCDC186Q7Z3E2 898 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 OSCARQ8IYS5 282 aa14.58□□□□□ -0.07
COL6A3-206ENST00000409809 RASEFQ8IZ41 740 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 MRPS27Q92552 414 aaKnown RBP14.58□□□□□ -0.08
COL6A3-206ENST00000409809 LRRC23Q53EV4 343 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-206ENST00000409809 CDCA7LQ96GN5 454 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 MTHFSP49914 203 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL6A3-206ENST00000409809 PSMA7O14818 248 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 FCHSD2O94868 740 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 CFAP157Q5JU67 520 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 CABS1Q96KC9 395 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 SSX2IPQ9Y2D8 614 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 PRPF4BQ13523 1007 aaKnown RBP14.58□□□□□ -0.08
COL6A3-206ENST00000409809 GTF3C6Q969F1 213 aa14.58□□□□□ -0.08
COL6A3-206ENST00000409809 ZFP91Q96JP5 570 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-206ENST00000409809 PPP1R12CQ9BZL4 782 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 SEPT2Q15019 361 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 RBM26Q5T8P6 1007 aaKnown RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 DEUP1Q05D60 604 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 MUM1Q2TAK8 710 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 EVI5LQ96CN4 794 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 SSRP1Q08945 709 aaKnown RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 GABPB2Q8TAK5 448 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 FAM71BQ8TC56 605 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 DRC3Q9H069 523 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 NUTM2DQ5VT03 806 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 NUTM2AQ8IVF1 878 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 NAPGQ99747 312 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-206ENST00000409809 EXOC1Q9NV70 894 aa14.57□□□□□ -0.08
COL6A3-206ENST00000409809 SMC1BQ8NDV3 1235 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 MRC2Q9UBG0 1479 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 MAP3K1Q13233 1512 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 ATP2C2O75185 946 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 GJB2P29033 226 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 UTP11Q9Y3A2 253 aaKnown RBP14.56□□□□□ -0.08
COL6A3-206ENST00000409809 LAMC3Q9Y6N6 1575 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 GFM2Q969S9 779 aaKnown RBP14.56□□□□□ -0.08
COL6A3-206ENST00000409809 DTNBP1Q96EV8 351 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 RBM27Q9P2N5 1060 aaKnown RBP14.56□□□□□ -0.08
COL6A3-206ENST00000409809 SLC4A8Q2Y0W8 1093 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 VWA3BQ502W6 1294 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 CCDC42Q96M95 316 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 SELENOSQ9BQE4 189 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 BCAR3O75815 825 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 PAK2Q13177 524 aa14.56□□□□□ -0.08
COL6A3-206ENST00000409809 ZC4H2Q9NQZ6 224 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 SLC4A2P04920 1241 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 PRR16Q569H4 304 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 RAPGEF4Q8WZA2 1011 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 LTV1Q96GA3 475 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-206ENST00000409809 HAUS8Q9BT25 410 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 PARP2Q9UGN5 583 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 HOXA7P31268 230 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-206ENST00000409809 SLC12A7Q9Y666 1083 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 RTL1A6NKG5 1358 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 GOLGA8KD6RF30 607 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 HDGFL1Q5TGJ6 251 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 GKAP1Q5VSY0 366 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-206ENST00000409809 PSMD7P51665 324 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 CCDC68Q9H2F9 335 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 IL16Q14005 1332 aa14.55□□□□□ -0.08
COL6A3-206ENST00000409809 SSBP05455 408 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL6A3-206ENST00000409809 TBC1D9Q6ZT07 1266 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 CAPZA3Q96KX2 299 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 AK9Q5TCS8 1911 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 CCDC194A0A1B0GVG4 234 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 MATR3P43243 847 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL6A3-206ENST00000409809 BRAPQ7Z569 592 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 TRIM47Q96LD4 638 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 IGF1RP08069 1367 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL6A3-206ENST00000409809 PSMC4P43686 418 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 CCDC97Q96F63 343 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-206ENST00000409809 BAG1Q99933 345 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-206ENST00000409809 ARHGAP6O43182 974 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 IQCA1Q86XH1 822 aa14.54□□□□□ -0.08
COL6A3-206ENST00000409809 PLEKHO1Q53GL0 409 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-206ENST00000409809 AIDAQ96BJ3 306 aa14.53□□□□□ -0.08
COL6A3-206ENST00000409809 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.53□□□□□ -0.08
COL6A3-206ENST00000409809 RNASELQ05823 741 aaKnown RBP14.53□□□□□ -0.08
COL6A3-206ENST00000409809 CCHCR1Q8TD31 782 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms