RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 A1BGP04217 495 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 ATP2B1P20020 1258 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 RPS8P62241 208 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 ANKRD20A12PQ8NF67 263 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 PUS7Q96PZ0 661 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 ZBED2Q9BTP6 218 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 BMP2KQ9NSY1 1161 aaPredicted RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 CALCOCO1Q9P1Z2 691 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 ANGEL1Q9UNK9 670 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 MAP3K4Q9Y6R4 1608 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 RBM10P98175 930 aaKnown RBP8.5□□□□□ -1.05
SCN9A-202ENST00000409435 TTC16Q8NEE8 873 aa8.5□□□□□ -1.05
SCN9A-202ENST00000409435 IGSF1Q8N6C5 1336 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 PHKG2P15735 406 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 MRE11P49959 708 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 EDC4Q6P2E9 1401 aaKnown RBP8.49□□□□□ -1.05
SCN9A-202ENST00000409435 SYNE4Q8N205 404 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 TTF2Q9UNY4 1162 aaKnown RBP8.49□□□□□ -1.05
SCN9A-202ENST00000409435 LIG1P18858 919 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 TTLL5Q6EMB2 1281 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 HELBQ8NG08 1087 aaPredicted RBP8.49□□□□□ -1.05
SCN9A-202ENST00000409435 VAT1LQ9HCJ6 419 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 SETSIPP0DME0 302 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 TCP10Q12799 353 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 FLIIQ13045 1269 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 ZFYVE27Q5T4F4 411 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 CERS3Q8IU89 383 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 KIAA0825Q8IV33 1275 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 PRKRIP1Q9H875 184 aaPredicted RBP8.49□□□□□ -1.05
SCN9A-202ENST00000409435 MYO6Q9UM54 1294 aa8.49□□□□□ -1.05
SCN9A-202ENST00000409435 NOL7Q9UMY1 257 aaKnown RBP8.49□□□□□ -1.05
SCN9A-202ENST00000409435 SSBP05455 408 aaKnown RBP eCLIP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 LMNB1P20700 586 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 PDCL3Q9H2J4 239 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 ANKARQ7Z5J8 1434 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 CELF2O95319 508 aaKnown RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 CT47B1P0C2W7 299 aaPredicted RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 ZYXQ15942 572 aaKnown RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 AXDND1Q5T1B0 1012 aaPredicted RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 BAG4O95429 457 aaKnown RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 ELMSAN1Q6PJG2 1045 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 APBB1IPQ7Z5R6 666 aaPredicted RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 PLBD2Q8NHP8 589 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 AP5M1Q9H0R1 490 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 GOPCQ9HD26 462 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 DIP2BQ9P265 1576 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 KCNA4P22459 653 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 KSR2Q6VAB6 950 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 BARGINQ6ZT62 677 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 DHX37Q8IY37 1157 aaKnown RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 FAM89AQ96GI7 184 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 TMCO5BA8MYB1 307 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 HUNKP57058 714 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 INTS3Q68E01 1043 aaKnown RBP8.48□□□□□ -1.05
SCN9A-202ENST00000409435 LMBR1LQ6UX01 489 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 STX8Q9UNK0 236 aa8.48□□□□□ -1.05
SCN9A-202ENST00000409435 RAD50Q92878 1312 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 NOP56O00567 594 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 MAGEB6P1A0A0J9YX57 407 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 TRMT1LQ7Z2T5 733 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 CCDC12Q8WUD4 166 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 ASAP1Q9ULH1 1129 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 NKTRP30414 1462 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 SPATA31A1Q5TZJ5 1347 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 KIF5BP33176 963 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 TNS4Q8IZW8 715 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 CDKL5O76039 1030 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 RBM25P49756 843 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 SYCP1Q15431 976 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 ARHGEF25Q86VW2 580 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 APOBEC3FQ8IUX4 373 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 ZFYVE28Q9HCC9 887 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 MKRN1Q9UHC7 482 aaKnown RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 RAB11FIP3O75154 756 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 BCAR3O75815 825 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 TBC1D10BQ4KMP7 808 aaPredicted RBP8.47□□□□□ -1.05
SCN9A-202ENST00000409435 SMARCC2Q8TAQ2 1214 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 KIF1BPQ96EK5 621 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 ZMYND15Q9H091 742 aa8.47□□□□□ -1.05
SCN9A-202ENST00000409435 CRB1P82279 1406 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 EIF3JO75822 258 aaKnown RBP8.46□□□□□ -1.05
SCN9A-202ENST00000409435 CATIPQ7Z7H3 387 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 NCAPG2Q86XI2 1143 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 FHDC1Q9C0D6 1143 aaPredicted RBP8.46□□□□□ -1.05
SCN9A-202ENST00000409435 DBNDD1Q9H9R9 158 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 SPATA31A5Q5VU36 1347 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 SPATA31A7Q8IWB4 1347 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 TNNT1P13805 278 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 CCDC173Q0VFZ6 552 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 PDCL2Q8N4E4 241 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 FAM200AQ8TCP9 573 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 IPO4Q8TEX9 1081 aaKnown RBP8.46□□□□□ -1.05
SCN9A-202ENST00000409435 SNRKQ9NRH2 765 aa8.46□□□□□ -1.05
SCN9A-202ENST00000409435 SRP68Q9UHB9 627 aaKnown RBP8.46□□□□□ -1.05
SCN9A-202ENST00000409435 GLI2P10070 1586 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 ROBO2Q9HCK4 1378 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 GOLGA6L10A0A0M3HER8 536 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 ITGA6P23229 1130 aa8.46□□□□□ -1.06
SCN9A-202ENST00000409435 IL15P40933 162 aaPredicted RBP8.46□□□□□ -1.06
SCN9A-202ENST00000409435 RETREG2Q8NC44 543 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms