RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 DDB1Q16531 1140 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 TAF7LQ5H9L4 462 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 ZNF34Q8IZ26 560 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 SYTL4Q96C24 671 aaPredicted RBP17.05■□□□□ 0.32
MKS1-203ENST00000393120 CHAMP1Q96JM3 812 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 NEK1Q96PY6 1258 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 PANK2Q9BZ23 570 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 TAF6LQ9Y6J9 622 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 TOB2Q14106 344 aaPredicted RBP17.04■□□□□ 0.32
MKS1-203ENST00000393120 CCDC129Q6ZRS4 1044 aa17.04■□□□□ 0.32
MKS1-203ENST00000393120 XAGE2Q96GT9 111 aa17.04■□□□□ 0.32
MKS1-203ENST00000393120 ARXQ96QS3 562 aa17.04■□□□□ 0.32
MKS1-203ENST00000393120 F13A1P00488 732 aa17.04■□□□□ 0.32
MKS1-203ENST00000393120 ZFYP08048 801 aaPredicted RBP17.04■□□□□ 0.32
MKS1-203ENST00000393120 HMGB1P09429 215 aaKnown RBP17.04■□□□□ 0.32
MKS1-203ENST00000393120 EIF5P55010 431 aaKnown RBP17.04■□□□□ 0.32
MKS1-203ENST00000393120 BARGINQ6ZT62 677 aa17.04■□□□□ 0.32
MKS1-203ENST00000393120 DZIP3Q86Y13 1208 aaKnown RBP17.04■□□□□ 0.32
MKS1-203ENST00000393120 NRAPQ86VF7 1730 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.03■□□□□ 0.32
MKS1-203ENST00000393120 SPATA31A5Q5VU36 1347 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 SPATA31A7Q8IWB4 1347 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 ANKRD18BA2A2Z9 1011 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 IRS4O14654 1257 aaPredicted RBP17.03■□□□□ 0.32
MKS1-203ENST00000393120 PDE8AO60658 829 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 CHGBP05060 677 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 CYP21A2P08686 494 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 ITGA6P23229 1130 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 GPTP24298 496 aa17.03■□□□□ 0.32
MKS1-203ENST00000393120 ZNF512BQ96KM6 892 aaPredicted RBP17.03■□□□□ 0.32
MKS1-203ENST00000393120 TRMT112Q9UI30 125 aaKnown RBP17.03■□□□□ 0.32
MKS1-203ENST00000393120 CCDC9Q9Y3X0 531 aaKnown RBP17.03■□□□□ 0.32
MKS1-203ENST00000393120 COL9A3Q14050 684 aaPredicted RBP17.02■□□□□ 0.32
MKS1-203ENST00000393120 TTC39AQ5SRH9 613 aa17.02■□□□□ 0.32
MKS1-203ENST00000393120 GORABQ5T7V8 394 aa17.02■□□□□ 0.32
MKS1-203ENST00000393120 MTMR6Q9Y217 621 aa17.02■□□□□ 0.32
MKS1-203ENST00000393120 ADAMTS2O95450 1211 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 PDCP20941 246 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 INTS5Q6P9B9 1019 aaKnown RBP17.02■□□□□ 0.31
MKS1-203ENST00000393120 LDHAL6AQ6ZMR3 332 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 SYNE4Q8N205 404 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 FAM43AQ8N2R8 423 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 GREM2Q9H772 168 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 CCDC87Q9NVE4 849 aa17.02■□□□□ 0.31
MKS1-203ENST00000393120 ADORA1P30542 326 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 USP48Q86UV5 1035 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 NECAB1Q8N987 351 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 MARCH10Q8NA82 808 aaPredicted RBP17.01■□□□□ 0.31
MKS1-203ENST00000393120 TMEM63CQ9P1W3 806 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 ANKRD36CQ5JPF3 1778 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 RIC1Q4ADV7 1423 aa17.01■□□□□ 0.31
MKS1-203ENST00000393120 PHLPP1O60346 1717 aa17■□□□□ 0.31
MKS1-203ENST00000393120 HSPD1P10809 573 aaKnown RBP17■□□□□ 0.31
MKS1-203ENST00000393120 ATP2B3Q16720 1220 aa17■□□□□ 0.31
MKS1-203ENST00000393120 METTL24Q5JXM2 366 aa17■□□□□ 0.31
MKS1-203ENST00000393120 VGLL2Q8N8G2 317 aa17■□□□□ 0.31
MKS1-203ENST00000393120 DOT1LQ8TEK3 1739 aa17■□□□□ 0.31
MKS1-203ENST00000393120 SYAP1Q96A49 352 aaPredicted RBP17■□□□□ 0.31
MKS1-203ENST00000393120 NSFL1CQ9UNZ2 370 aaKnown RBP17■□□□□ 0.31
MKS1-203ENST00000393120 TBC1D2BQ9UPU7 963 aa17■□□□□ 0.31
MKS1-203ENST00000393120 MAST3O60307 1309 aa17■□□□□ 0.31
MKS1-203ENST00000393120 UBN2Q6ZU65 1347 aa17■□□□□ 0.31
MKS1-203ENST00000393120 CCDC85AQ96PX6 553 aaPredicted RBP17■□□□□ 0.31
MKS1-203ENST00000393120 SLIT2O94813 1529 aa16.99■□□□□ 0.31
MKS1-203ENST00000393120 FKBP4Q02790 459 aaKnown RBP eCLIP16.99■□□□□ 0.31
MKS1-203ENST00000393120 DHX32Q7L7V1 743 aaKnown RBP16.99■□□□□ 0.31
MKS1-203ENST00000393120 KLHL34Q8N239 644 aa16.99■□□□□ 0.31
MKS1-203ENST00000393120 RBM27Q9P2N5 1060 aaKnown RBP16.99■□□□□ 0.31
MKS1-203ENST00000393120 CICQ96RK0 1608 aaPredicted RBP16.99■□□□□ 0.31
MKS1-203ENST00000393120 LOC102724428A0A0B4J2F2 783 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 NASPP49321 788 aaPredicted RBP16.98■□□□□ 0.31
MKS1-203ENST00000393120 SIK1P57059 783 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 CSPP1Q1MSJ5 1256 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 LARP1BQ659C4 914 aaKnown RBP16.98■□□□□ 0.31
MKS1-203ENST00000393120 LRSAM1Q6UWE0 723 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 TCEANC2Q96MN5 208 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 PDE8BO95263 885 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 ATP6V1AP38606 617 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 CRKLP46109 303 aaKnown RBP16.98■□□□□ 0.31
MKS1-203ENST00000393120 EXOSC10Q01780 885 aaKnown RBP16.98■□□□□ 0.31
MKS1-203ENST00000393120 PARP10Q53GL7 1025 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 STOX1Q6ZVD7 989 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 SMARCC1Q92922 1105 aaPredicted RBP16.98■□□□□ 0.31
MKS1-203ENST00000393120 OSBP2Q969R2 916 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 AGXT2Q9BYV1 514 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 CNNM1Q9NRU3 951 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 CTNNA3Q9UI47 895 aa16.98■□□□□ 0.31
MKS1-203ENST00000393120 NUP98P52948 1817 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 RREB1Q92766 1687 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 Q6ZUG5 572 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 FBXL16Q8N461 479 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 GTF3C6Q969F1 213 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 CNPY2Q9Y2B0 182 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 NWD2Q9ULI1 1742 aa16.97■□□□□ 0.31
MKS1-203ENST00000393120 M0R2C6 588 aa16.96■□□□□ 0.31
MKS1-203ENST00000393120 ZAP70P43403 619 aa16.96■□□□□ 0.31
MKS1-203ENST00000393120 UBE2HP62256 183 aa16.96■□□□□ 0.31
MKS1-203ENST00000393120 SCARF1Q14162 830 aa16.96■□□□□ 0.31
MKS1-203ENST00000393120 SLFNL1Q499Z3 407 aa16.96■□□□□ 0.31
MKS1-203ENST00000393120 APPBP2Q92624 585 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms