RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 NLGN1Q8N2Q7 840 aa15.14■□□□□ 0.01
CIITA-202ENST00000381835 DDR1Q08345 913 aa15.13■□□□□ 0.01
CIITA-202ENST00000381835 PRR5LQ6MZQ0 368 aa15.13■□□□□ 0.01
CIITA-202ENST00000381835 MPHOSPH8Q99549 860 aa15.13■□□□□ 0.01
CIITA-202ENST00000381835 SDSP20132 328 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 METTL24Q5JXM2 366 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 MSL1Q68DK7 614 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 GPATCH3Q96I76 525 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 NEUROD6Q96NK8 337 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 C22orf23Q9BZE7 217 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 RIPOR2Q9Y4F9 1068 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 POLRMTO00411 1230 aaKnown RBP15.12■□□□□ 0.01
CIITA-202ENST00000381835 TIMM10P62072 90 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 RTL9Q8NET4 1388 aa15.12■□□□□ 0.01
CIITA-202ENST00000381835 TRIM6-TRIM34B2RNG4 842 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 IGHMBP2P38935 993 aaKnown RBP15.11■□□□□ 0.01
CIITA-202ENST00000381835 MFAP1P55081 439 aaKnown RBP15.11■□□□□ 0.01
CIITA-202ENST00000381835 CCDC125Q86Z20 511 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 PI4K2BQ8TCG2 481 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 CDC5LQ99459 802 aaKnown RBP15.11■□□□□ 0.01
CIITA-202ENST00000381835 ECHDC1Q9NTX5 307 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 DBNLQ9UJU6 430 aaKnown RBP15.11■□□□□ 0.01
CIITA-202ENST00000381835 AOX1Q06278 1338 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 TTC41PQ6P2S7 1318 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 ST5P78524 1137 aa15.11■□□□□ 0.01
CIITA-202ENST00000381835 TNRC6CQ9HCJ0 1690 aaKnown RBP15.11■□□□□ 0.01
CIITA-202ENST00000381835 ERC2O15083 957 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 MAP4K4O95819 1239 aaPredicted RBP15.1■□□□□ 0.01
CIITA-202ENST00000381835 RILPL2Q969X0 211 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 DBNDD2Q9BQY9 259 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 COL4A1P02462 1669 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 RIC1Q4ADV7 1423 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 A0A1B0GUL7 405 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 ANKRD18AQ8IVF6 992 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 HELBQ8NG08 1087 aaPredicted RBP15.1■□□□□ 0.01
CIITA-202ENST00000381835 GPR108Q9NPR9 543 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 AK9Q5TCS8 1911 aa15.1■□□□□ 0.01
CIITA-202ENST00000381835 GLRX3O76003 335 aaKnown RBP15.09■□□□□ 0.01
CIITA-202ENST00000381835 MMP10P09238 476 aa15.09■□□□□ 0.01
CIITA-202ENST00000381835 MCM4P33991 863 aa15.09■□□□□ 0.01
CIITA-202ENST00000381835 ZNF609O15014 1411 aa15.09■□□□□ 0.01
CIITA-202ENST00000381835 CELF1Q92879 486 aaKnown RBP15.09■□□□□ 0.01
CIITA-202ENST00000381835 AKAP2Q9Y2D5 859 aa15.09■□□□□ 0.01
CIITA-202ENST00000381835 LRP5O75197 1615 aa15.08■□□□□ 0
CIITA-202ENST00000381835 CDC45O75419 566 aa15.08■□□□□ 0
CIITA-202ENST00000381835 TBC1D9Q6ZT07 1266 aa15.08■□□□□ 0
CIITA-202ENST00000381835 DDX46Q7L014 1031 aaKnown RBP15.08■□□□□ 0
CIITA-202ENST00000381835 PDGFDQ9GZP0 370 aaPredicted RBP15.08■□□□□ 0
CIITA-202ENST00000381835 CHMP5Q9NZZ3 219 aa15.08■□□□□ 0
CIITA-202ENST00000381835 PARP3Q9Y6F1 533 aa15.08■□□□□ 0
CIITA-202ENST00000381835 MROH5Q6ZUA9 1318 aa15.08■□□□□ 0
CIITA-202ENST00000381835 PDE8BO95263 885 aa15.08■□□□□ 0
CIITA-202ENST00000381835 BOLA2Q9H3K6 86 aa15.08■□□□□ 0
CIITA-202ENST00000381835 QSER1Q2KHR3 1735 aa15.07■□□□□ 0
CIITA-202ENST00000381835 GOLGA6L3A6NEY3 463 aa15.07■□□□□ 0
CIITA-202ENST00000381835 TAF5LO75529 589 aa15.07■□□□□ 0
CIITA-202ENST00000381835 ATP2B3Q16720 1220 aa15.07■□□□□ 0
CIITA-202ENST00000381835 VGLL2Q8N8G2 317 aa15.07■□□□□ 0
CIITA-202ENST00000381835 RPS8P62241 208 aaKnown RBP15.06■□□□□ 0
CIITA-202ENST00000381835 ADORA1P30542 326 aa15.06■□□□□ 0
CIITA-202ENST00000381835 GORABQ5T7V8 394 aa15.06■□□□□ 0
CIITA-202ENST00000381835 RPGRQ92834 1020 aaKnown RBP15.06■□□□□ 0
CIITA-202ENST00000381835 XAGE2Q96GT9 111 aa15.06■□□□□ 0
CIITA-202ENST00000381835 GZF1Q9H116 711 aaPredicted RBP15.06■□□□□ 0
CIITA-202ENST00000381835 BSDC1Q9NW68 430 aaPredicted RBP15.06■□□□□ 0
CIITA-202ENST00000381835 SNAP23O00161 211 aa15.05■□□□□ 0
CIITA-202ENST00000381835 CHRNDQ07001 517 aa15.05■□□□□ 0
CIITA-202ENST00000381835 HSCBQ8IWL3 235 aa15.05■□□□□ 0
CIITA-202ENST00000381835 CNTROBQ8N137 903 aa15.05■□□□□ 0
CIITA-202ENST00000381835 ATP5JP18859 108 aa15.04■□□□□ -0
CIITA-202ENST00000381835 PUM3Q15397 648 aaKnown RBP15.04■□□□□ -0
CIITA-202ENST00000381835 NDUFB9Q9Y6M9 179 aa15.04■□□□□ -0
CIITA-202ENST00000381835 NRXN2Q9P2S2 1712 aa15.04■□□□□ -0
CIITA-202ENST00000381835 ANKRD31Q8N7Z5 1873 aa15.04■□□□□ -0
CIITA-202ENST00000381835 XRCC6P12956 609 aaKnown RBP eCLIP15.04■□□□□ -0
CIITA-202ENST00000381835 CRY2Q49AN0 593 aa15.04■□□□□ -0
CIITA-202ENST00000381835 CASC1Q6TDU7 716 aa15.04■□□□□ -0
CIITA-202ENST00000381835 TRAK2O60296 914 aa15.03■□□□□ -0
CIITA-202ENST00000381835 CCDC158Q5M9N0 1113 aa15.03■□□□□ -0
CIITA-202ENST00000381835 UPF1Q92900 1129 aaKnown RBP eCLIP15.03■□□□□ -0
CIITA-202ENST00000381835 RRAGDQ9NQL2 400 aaPredicted RBP15.03■□□□□ -0
CIITA-202ENST00000381835 MINPP1Q9UNW1 487 aa15.03■□□□□ -0
CIITA-202ENST00000381835 FSD2A1L4K1 749 aa15.03■□□□□ -0
CIITA-202ENST00000381835 GRAPQ13588 217 aa15.03■□□□□ -0
CIITA-202ENST00000381835 GRAPLQ8TC17 118 aaPredicted RBP15.03■□□□□ -0
CIITA-202ENST00000381835 LPIN2Q92539 896 aa15.03■□□□□ -0
CIITA-202ENST00000381835 DNAJC2Q99543 621 aaKnown RBP15.03■□□□□ -0
CIITA-202ENST00000381835 BRIP1Q9BX63 1249 aa15.03■□□□□ -0
CIITA-202ENST00000381835 FGFR2P21802 821 aa15.02■□□□□ -0
CIITA-202ENST00000381835 TTC39AQ5SRH9 613 aa15.02■□□□□ -0
CIITA-202ENST00000381835 EDC3Q96F86 508 aaKnown RBP15.02■□□□□ -0
CIITA-202ENST00000381835 RBM17Q96I25 401 aaKnown RBP15.02■□□□□ -0
CIITA-202ENST00000381835 A0A1B0GUL6 1792 aa15.02□□□□□ -0.01
CIITA-202ENST00000381835 SLC5A1P13866 664 aa15.01□□□□□ -0.01
CIITA-202ENST00000381835 EVI5LQ96CN4 794 aa15.01□□□□□ -0.01
CIITA-202ENST00000381835 IFIT1P09914 478 aaKnown RBP15.01□□□□□ -0.01
CIITA-202ENST00000381835 CHMLP26374 656 aa15.01□□□□□ -0.01
CIITA-202ENST00000381835 KLRG2A4D1S0 409 aaPredicted RBP15□□□□□ -0.01
CIITA-202ENST00000381835 WTIPA6NIX2 430 aaPredicted RBP15□□□□□ -0.01
CIITA-202ENST00000381835 HAUS7Q99871 368 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms