RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ADD1P35611 737 aaKnown RBP18.52■□□□□ 0.55
CKAP4-201ENST00000378026 L2HGDHQ9H9P8 463 aa18.52■□□□□ 0.55
CKAP4-201ENST00000378026 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.52■□□□□ 0.55
CKAP4-201ENST00000378026 ST5P78524 1137 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 NGDNQ8NEJ9 315 aaKnown RBP18.51■□□□□ 0.55
CKAP4-201ENST00000378026 NCOA5Q9HCD5 579 aaKnown RBP18.51■□□□□ 0.55
CKAP4-201ENST00000378026 A2ML1A8K2U0 1454 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 GOLGA8FQ08AF8 430 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 GOLGA8DPQ0D2H9 430 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 CCDC34Q96HJ3 373 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 ZFP91Q96JP5 570 aaPredicted RBP18.51■□□□□ 0.55
CKAP4-201ENST00000378026 NAT10Q9H0A0 1025 aaKnown RBP18.51■□□□□ 0.55
CKAP4-201ENST00000378026 RIMBP3CA6NJZ7 1639 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 RIMBP3BA6NNM3 1639 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 RIMBP3Q9UFD9 1639 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 FAM208AQ9UK61 1670 aaKnown RBP18.51■□□□□ 0.55
CKAP4-201ENST00000378026 FAM160A1Q05DH4 1040 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 ERC1Q8IUD2 1116 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 RCOR1Q9UKL0 485 aa18.51■□□□□ 0.55
CKAP4-201ENST00000378026 GIGYF1O75420 1035 aaPredicted RBP18.5■□□□□ 0.55
CKAP4-201ENST00000378026 TAF5LO75529 589 aa18.5■□□□□ 0.55
CKAP4-201ENST00000378026 RAD51AP2Q09MP3 1159 aa18.5■□□□□ 0.55
CKAP4-201ENST00000378026 CARD6Q9BX69 1037 aa18.5■□□□□ 0.55
CKAP4-201ENST00000378026 KDRP35968 1356 aa18.5■□□□□ 0.55
CKAP4-201ENST00000378026 LMOD1P29536 600 aaPredicted RBP18.5■□□□□ 0.55
CKAP4-201ENST00000378026 NLRP6P59044 892 aa18.5■□□□□ 0.55
CKAP4-201ENST00000378026 AIMP1Q12904 312 aaKnown RBP18.5■□□□□ 0.55
CKAP4-201ENST00000378026 IPO4Q8TEX9 1081 aaKnown RBP18.5■□□□□ 0.55
CKAP4-201ENST00000378026 TULP2O00295 520 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 GYS2P54840 703 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 APOBRQ0VD83 1088 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 GNL2Q13823 731 aaKnown RBP18.49■□□□□ 0.55
CKAP4-201ENST00000378026 CCDC93Q567U6 631 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 TEX35Q5T0J7 233 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 ARGLU1Q9NWB6 273 aaPredicted RBP18.49■□□□□ 0.55
CKAP4-201ENST00000378026 PXDNLA1KZ92 1463 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 SBNO1A3KN83 1393 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 EIF4A1P60842 406 aaKnown RBP18.49■□□□□ 0.55
CKAP4-201ENST00000378026 ENGASEQ8NFI3 743 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 OSBPL5Q9H0X9 879 aaPredicted RBP18.49■□□□□ 0.55
CKAP4-201ENST00000378026 USP6P35125 1406 aa18.49■□□□□ 0.55
CKAP4-201ENST00000378026 TEFQ10587 303 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 PROSER3Q2NL68 480 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 ORC3Q9UBD5 711 aaPredicted RBP18.48■□□□□ 0.55
CKAP4-201ENST00000378026 ROBO2Q9HCK4 1378 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 PTPDC1A2A3K4 754 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 OTUD7BQ6GQQ9 843 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 KRBA2Q6ZNG9 492 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 CHST3Q7LGC8 479 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 SMARCE1Q969G3 411 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 SUCLG2Q96I99 432 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 BICC1Q9H694 974 aaKnown RBP18.48■□□□□ 0.55
CKAP4-201ENST00000378026 ITSN1Q15811 1721 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 ADGRL3Q9HAR2 1447 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 SF3A1Q15459 793 aaKnown RBP18.48■□□□□ 0.55
CKAP4-201ENST00000378026 C14orf37Q86TY3 774 aa18.48■□□□□ 0.55
CKAP4-201ENST00000378026 NRDCO43847 1150 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 NDUFA8P51970 172 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 CERS3Q8IU89 383 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 HMG20BQ9P0W2 317 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 PCDHA7Q9UN72 937 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 CYP21A2P08686 494 aa18.47■□□□□ 0.55
CKAP4-201ENST00000378026 FEZ2Q9UHY8 353 aaPredicted RBP18.47■□□□□ 0.55
CKAP4-201ENST00000378026 ETF1P62495 437 aaKnown RBP18.46■□□□□ 0.55
CKAP4-201ENST00000378026 CCDC150Q8NCX0 1101 aa18.46■□□□□ 0.55
CKAP4-201ENST00000378026 NSUN7Q8NE18 718 aaKnown RBP18.46■□□□□ 0.55
CKAP4-201ENST00000378026 RGPD1P0DJD0 1748 aa18.46■□□□□ 0.55
CKAP4-201ENST00000378026 PLEKHG3A1L390 1219 aa18.46■□□□□ 0.55
CKAP4-201ENST00000378026 POLR3DP05423 398 aaPredicted RBP18.46■□□□□ 0.55
CKAP4-201ENST00000378026 ZNF396Q96N95 335 aaPredicted RBP18.46■□□□□ 0.55
CKAP4-201ENST00000378026 UTP14AQ9BVJ6 771 aaKnown RBP18.46■□□□□ 0.55
CKAP4-201ENST00000378026 IMPACTQ9P2X3 320 aa18.46■□□□□ 0.55
CKAP4-201ENST00000378026 USP31Q70CQ4 1352 aa18.46■□□□□ 0.55
CKAP4-201ENST00000378026 ATP1A3P13637 1013 aa18.46■□□□□ 0.54
CKAP4-201ENST00000378026 OAS2P29728 719 aaKnown RBP18.46■□□□□ 0.54
CKAP4-201ENST00000378026 TPM4P67936 248 aa18.46■□□□□ 0.54
CKAP4-201ENST00000378026 MRPS27Q92552 414 aaKnown RBP18.46■□□□□ 0.54
CKAP4-201ENST00000378026 PRAMEF22A3QJZ6 481 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 PSDA5PKW4 1024 aaPredicted RBP18.45■□□□□ 0.54
CKAP4-201ENST00000378026 ZRANB2O95218 330 aaKnown RBP eCLIP18.45■□□□□ 0.54
CKAP4-201ENST00000378026 CTDNEP1O95476 244 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 MTX1Q13505 466 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 KRT32Q14532 448 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 COL15A1P39059 1388 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 MED23Q9ULK4 1368 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 SASH3O75995 380 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 TNNT3P45378 269 aaPredicted RBP18.45■□□□□ 0.54
CKAP4-201ENST00000378026 EVCP57679 992 aa18.45■□□□□ 0.54
CKAP4-201ENST00000378026 ALDH8A1Q9H2A2 487 aaPredicted RBP18.45■□□□□ 0.54
CKAP4-201ENST00000378026 FANCGO15287 622 aa18.44■□□□□ 0.54
CKAP4-201ENST00000378026 KIAA1468Q9P260 1216 aa18.44■□□□□ 0.54
CKAP4-201ENST00000378026 AKAP12Q02952 1782 aa18.44■□□□□ 0.54
CKAP4-201ENST00000378026 HOXC9P31274 260 aa18.44■□□□□ 0.54
CKAP4-201ENST00000378026 HSP90AA4PQ58FG1 418 aa18.44■□□□□ 0.54
CKAP4-201ENST00000378026 FMR1NBQ8N0W7 255 aaPredicted RBP18.44■□□□□ 0.54
CKAP4-201ENST00000378026 BTBD11A6QL63 1104 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 MPRIPQ6WCQ1 1025 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 STOX1Q6ZVD7 989 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 STK38Q15208 465 aa18.43■□□□□ 0.54
CKAP4-201ENST00000378026 C10orf67Q8IYJ2 551 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms