RNA–Protein interactions for RNA: ENST00000376724.6

TRIM40-206, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene TRIM40, Length 2,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-206ENST00000376724 RIC1Q4ADV7 1423 aa15.59■□□□□ 0.09
TRIM40-206ENST00000376724 FKBP4Q02790 459 aaKnown RBP eCLIP15.59■□□□□ 0.09
TRIM40-206ENST00000376724 HELBQ8NG08 1087 aaPredicted RBP15.59■□□□□ 0.09
TRIM40-206ENST00000376724 ARHGEF1Q92888 912 aaKnown RBP15.59■□□□□ 0.09
TRIM40-206ENST00000376724 TRIM37O94972 964 aa15.58■□□□□ 0.09
TRIM40-206ENST00000376724 HSP90B1P14625 803 aaKnown RBP15.58■□□□□ 0.09
TRIM40-206ENST00000376724 FAM196AQ6ZSG2 479 aa15.58■□□□□ 0.09
TRIM40-206ENST00000376724 MPHOSPH8Q99549 860 aa15.58■□□□□ 0.09
TRIM40-206ENST00000376724 UPF3BQ9BZI7 483 aaKnown RBP15.58■□□□□ 0.09
TRIM40-206ENST00000376724 SNRKQ9NRH2 765 aa15.58■□□□□ 0.09
TRIM40-206ENST00000376724 KCNJ4P48050 445 aa15.58■□□□□ 0.08
TRIM40-206ENST00000376724 KBTBD3Q8NAB2 608 aa15.58■□□□□ 0.08
TRIM40-206ENST00000376724 LRRC4BQ9NT99 713 aa15.58■□□□□ 0.08
TRIM40-206ENST00000376724 SNX14Q9Y5W7 946 aa15.58■□□□□ 0.08
TRIM40-206ENST00000376724 CCDC171Q6TFL3 1326 aa15.58■□□□□ 0.08
TRIM40-206ENST00000376724 PDE8BO95263 885 aa15.57■□□□□ 0.08
TRIM40-206ENST00000376724 PRPF40BQ6NWY9 871 aaKnown RBP15.57■□□□□ 0.08
TRIM40-206ENST00000376724 NOL8Q76FK4 1167 aaKnown RBP15.57■□□□□ 0.08
TRIM40-206ENST00000376724 ZNF589Q86UQ0 364 aaPredicted RBP15.57■□□□□ 0.08
TRIM40-206ENST00000376724 RASEFQ8IZ41 740 aa15.57■□□□□ 0.08
TRIM40-206ENST00000376724 SETDB2Q96T68 719 aa15.57■□□□□ 0.08
TRIM40-206ENST00000376724 CHMP5Q9NZZ3 219 aa15.57■□□□□ 0.08
TRIM40-206ENST00000376724 LY75O60449 1722 aa15.57■□□□□ 0.08
TRIM40-206ENST00000376724 DDX60Q8IY21 1712 aaKnown RBP15.57■□□□□ 0.08
TRIM40-206ENST00000376724 RFC4P35249 363 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 VGLL2Q8N8G2 317 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 SEC62Q99442 399 aaKnown RBP15.56■□□□□ 0.08
TRIM40-206ENST00000376724 FRAT2O75474 233 aaPredicted RBP15.56■□□□□ 0.08
TRIM40-206ENST00000376724 TAF5LO75529 589 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 IGHMBP2P38935 993 aaKnown RBP15.56■□□□□ 0.08
TRIM40-206ENST00000376724 SLFNL1Q499Z3 407 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 TRAPPC3LQ5T215 181 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 CCDC129Q6ZRS4 1044 aa15.56■□□□□ 0.08
TRIM40-206ENST00000376724 MROH5Q6ZUA9 1318 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 SCARF1Q14162 830 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 C3orf67Q6ZVT6 689 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 CCDC24Q8N4L8 307 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 RBM8AQ9Y5S9 174 aaKnown RBP15.55■□□□□ 0.08
TRIM40-206ENST00000376724 MED23Q9ULK4 1368 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 EP400Q96L91 3159 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 NBPF5PQ86XG9 351 aaPredicted RBP15.55■□□□□ 0.08
TRIM40-206ENST00000376724 MAP4K1Q92918 833 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 BRWD3Q6RI45 1802 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 TAF1LQ8IZX4 1826 aa15.55■□□□□ 0.08
TRIM40-206ENST00000376724 C4BP0C0L5 1744 aa15.54■□□□□ 0.08
TRIM40-206ENST00000376724 SCN7AQ01118 1682 aa15.54■□□□□ 0.08
TRIM40-206ENST00000376724 SNAP23O00161 211 aa15.54■□□□□ 0.08
TRIM40-206ENST00000376724 PUM3Q15397 648 aaKnown RBP15.54■□□□□ 0.08
TRIM40-206ENST00000376724 PI16Q6UXB8 463 aa15.54■□□□□ 0.08
TRIM40-206ENST00000376724 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.54■□□□□ 0.08
TRIM40-206ENST00000376724 NPHP1O15259 732 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 ZAP70P43403 619 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 NECTIN1Q15223 517 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 MCMDC2Q4G0Z9 681 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 ZNF772Q68DY9 489 aaPredicted RBP15.53■□□□□ 0.08
TRIM40-206ENST00000376724 IL17RAQ96F46 866 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 NYXQ9GZU5 481 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 RFX7Q2KHR2 1363 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 DDIT3P35638 169 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 RBM6P78332 1123 aaKnown RBP15.53■□□□□ 0.08
TRIM40-206ENST00000376724 CREB3L3Q68CJ9 461 aa15.53■□□□□ 0.08
TRIM40-206ENST00000376724 RGL2O15211 777 aa15.52■□□□□ 0.08
TRIM40-206ENST00000376724 CPA1P15085 419 aa15.52■□□□□ 0.08
TRIM40-206ENST00000376724 ZKSCAN1P17029 563 aaPredicted RBP15.52■□□□□ 0.08
TRIM40-206ENST00000376724 CASTP20810 708 aaKnown RBP15.52■□□□□ 0.08
TRIM40-206ENST00000376724 MCAMP43121 646 aa15.52■□□□□ 0.08
TRIM40-206ENST00000376724 ADCK5Q3MIX3 580 aa15.52■□□□□ 0.08
TRIM40-206ENST00000376724 LPIN2Q92539 896 aa15.52■□□□□ 0.08
TRIM40-206ENST00000376724 CDC5LQ99459 802 aaKnown RBP15.52■□□□□ 0.08
TRIM40-206ENST00000376724 ABCC12Q96J65 1359 aa15.52■□□□□ 0.07
TRIM40-206ENST00000376724 LAMB2P55268 1798 aa15.52■□□□□ 0.07
TRIM40-206ENST00000376724 SPEF2Q9C093 1822 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.51■□□□□ 0.07
TRIM40-206ENST00000376724 PHKA1P46020 1223 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 CCDC102BQ68D86 513 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 TPTE2Q6XPS3 522 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 TMX3Q96JJ7 454 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 JAKMIP1Q96N16 626 aaKnown RBP15.51■□□□□ 0.07
TRIM40-206ENST00000376724 RTL9Q8NET4 1388 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 LRP5O75197 1615 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 SLC27A2O14975 620 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 RNF113AO15541 343 aaKnown RBP15.51■□□□□ 0.07
TRIM40-206ENST00000376724 SLC5A1P13866 664 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 FGFR2P21802 821 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 MCM2P49736 904 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 SF3B3Q15393 1217 aaKnown RBP15.51■□□□□ 0.07
TRIM40-206ENST00000376724 ANKRD18AQ8IVF6 992 aa15.51■□□□□ 0.07
TRIM40-206ENST00000376724 CHRNDQ07001 517 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 SLC10A5Q5PT55 438 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 ZGPATQ8N5A5 531 aaKnown RBP15.5■□□□□ 0.07
TRIM40-206ENST00000376724 NLRP3Q96P20 1036 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 HELLSQ9NRZ9 838 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 SSFA2P28290 1259 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 SLC27A3Q5K4L6 730 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 ZMYM1Q5SVZ6 1142 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 RNF20Q5VTR2 975 aa15.5■□□□□ 0.07
TRIM40-206ENST00000376724 LARP6Q9BRS8 491 aaKnown RBP15.5■□□□□ 0.07
TRIM40-206ENST00000376724 COL4A1P02462 1669 aa15.49■□□□□ 0.07
TRIM40-206ENST00000376724 WASHC4Q2M389 1173 aa15.49■□□□□ 0.07
TRIM40-206ENST00000376724 KCNB2Q92953 911 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms