RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RTN1Q16799 776 aa15.62■□□□□ 0.09
COL4A1-201ENST00000375820 ANKRD24Q8TF21 1146 aa15.62■□□□□ 0.09
COL4A1-201ENST00000375820 FERMT1Q9BQL6 677 aa15.62■□□□□ 0.09
COL4A1-201ENST00000375820 CCDC186Q7Z3E2 898 aa15.62■□□□□ 0.09
COL4A1-201ENST00000375820 MEIS3Q99687 375 aa15.62■□□□□ 0.09
COL4A1-201ENST00000375820 SKILP12757 684 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 SDSP20132 328 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 DNM1Q05193 864 aaKnown RBP15.61■□□□□ 0.09
COL4A1-201ENST00000375820 CKAP4Q07065 602 aaKnown RBP15.61■□□□□ 0.09
COL4A1-201ENST00000375820 CCDC25Q86WR0 208 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 UTP14AQ9BVJ6 771 aaKnown RBP15.61■□□□□ 0.09
COL4A1-201ENST00000375820 PTPRCP08575 1304 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 RIMBP2O15034 1052 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 LDHCP07864 332 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 HELBQ8NG08 1087 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-201ENST00000375820 ADGRF5Q8IZF2 1346 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 NEMFO60524 1076 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 KIF4AO95239 1232 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 ATP2B3Q16720 1220 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 PROCA1Q8NCQ7 364 aaPredicted RBP15.61■□□□□ 0.09
COL4A1-201ENST00000375820 EHBP1L1Q8N3D4 1523 aa15.61■□□□□ 0.09
COL4A1-201ENST00000375820 RAB3IL1Q8TBN0 382 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 CDK13Q14004 1512 aaKnown RBP15.6■□□□□ 0.09
COL4A1-201ENST00000375820 LMOD1P29536 600 aaPredicted RBP15.6■□□□□ 0.09
COL4A1-201ENST00000375820 MCM7P33993 719 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 ATP6V1AP38606 617 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 RBM8AQ9Y5S9 174 aaKnown RBP15.6■□□□□ 0.09
COL4A1-201ENST00000375820 KANK3Q6NY19 840 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 SMARCC2Q8TAQ2 1214 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 IFT81Q8WYA0 676 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 GPIHBP1Q8IV16 184 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 LZTFL1Q9NQ48 299 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 IFNL2Q8IZJ0 200 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 RHPN1Q8TCX5 695 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 NDC80O14777 642 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 IGSF3O75054 1194 aa15.6■□□□□ 0.09
COL4A1-201ENST00000375820 BMS1Q14692 1282 aaKnown RBP15.6■□□□□ 0.09
COL4A1-201ENST00000375820 CCDC152Q4G0S7 254 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 XAGE3Q8WTP9 111 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 BBXQ8WY36 941 aaPredicted RBP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 ZKSCAN3Q9BRR0 538 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 WASLO00401 505 aaPredicted RBP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 ANKRD13DQ6ZTN6 518 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 DACT1Q9NYF0 836 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 CTAGE15A4D2H0 777 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 CTAGE8P0CG41 777 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 SYT1P21579 422 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 CTAGE6Q86UF2 777 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 CTAGE4Q8IX94 777 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 MRRFQ96E11 262 aaKnown RBP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 UIMC1Q96RL1 719 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 RMND1Q9NWS8 449 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 LRPPRCP42704 1394 aaKnown RBP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 RHOXF2BP0C7M4 288 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 RHOXF2Q9BQY4 288 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 ERMNQ8TAM6 284 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 GUCA1BQ9UMX6 200 aa15.59■□□□□ 0.09
COL4A1-201ENST00000375820 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.59■□□□□ 0.09
COL4A1-201ENST00000375820 FAM160A1Q05DH4 1040 aa15.58■□□□□ 0.09
COL4A1-201ENST00000375820 IFI16Q16666 785 aaKnown RBP15.58■□□□□ 0.09
COL4A1-201ENST00000375820 SLC9C2Q5TAH2 1124 aa15.58■□□□□ 0.09
COL4A1-201ENST00000375820 PPP1R9BQ96SB3 815 aa15.58■□□□□ 0.09
COL4A1-201ENST00000375820 TTC12Q9H892 705 aaPredicted RBP15.58■□□□□ 0.09
COL4A1-201ENST00000375820 CFAP58Q5T655 872 aa15.58■□□□□ 0.08
COL4A1-201ENST00000375820 TNNI2P48788 182 aa15.58■□□□□ 0.08
COL4A1-201ENST00000375820 LRSAM1Q6UWE0 723 aa15.58■□□□□ 0.08
COL4A1-201ENST00000375820 TLDC2A0PJX2 215 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 HSPA4P34932 840 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 CYLC1P35663 651 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 APOBRQ0VD83 1088 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 COPS6Q7L5N1 327 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 ZEB2O60315 1214 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 HARSP12081 509 aaKnown RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 IRX5P78411 483 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 UBXN1Q04323 297 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 ZBTB16Q05516 673 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 NAA16Q6N069 864 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 NBPF7P0C2Y1 421 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 NMIQ13287 307 aaPredicted RBP15.57■□□□□ 0.08
COL4A1-201ENST00000375820 PIK3R4Q99570 1358 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 FAM13AO94988 1023 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 MSL1Q68DK7 614 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 CCDC114Q96M63 670 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 TIGD1Q96MW7 591 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 SELENOOQ9BVL4 669 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 KRT23Q9C075 422 aa15.57■□□□□ 0.08
COL4A1-201ENST00000375820 GOLGA6L9A6NEM1 432 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 KCNK9Q9NPC2 374 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 ARHGEF11O15085 1522 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 SNRPA1P09661 255 aaKnown RBP15.56■□□□□ 0.08
COL4A1-201ENST00000375820 GSTO1P78417 241 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 SPATA24Q86W54 205 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 SETDB2Q96T68 719 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 DCAF17Q5H9S7 520 aaPredicted RBP15.56■□□□□ 0.08
COL4A1-201ENST00000375820 ESR2Q92731 530 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 UAP1Q16222 522 aaPredicted RBP15.56■□□□□ 0.08
COL4A1-201ENST00000375820 LMBR1LQ6UX01 489 aa15.56■□□□□ 0.08
COL4A1-201ENST00000375820 MAGEB6Q8N7X4 407 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms