RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ANKIB1Q9P2G1 1089 aa27.69■■■□□ 2.02
CCDC28B-201ENST00000373602 MYH3P11055 1940 aa27.69■■■□□ 2.02
CCDC28B-201ENST00000373602 CASP7P55210 303 aa27.68■■■□□ 2.02
CCDC28B-201ENST00000373602 GPR101Q96P66 508 aaPredicted RBP27.68■■■□□ 2.02
CCDC28B-201ENST00000373602 GGA1Q9UJY5 639 aa27.68■■■□□ 2.02
CCDC28B-201ENST00000373602 UFL1O94874 794 aa27.67■■■□□ 2.02
CCDC28B-201ENST00000373602 TMEM88BA6NKF7 163 aa27.66■■■□□ 2.02
CCDC28B-201ENST00000373602 ECE2O60344 883 aa27.66■■■□□ 2.02
CCDC28B-201ENST00000373602 DOK7Q18PE1 504 aa27.66■■■□□ 2.02
CCDC28B-201ENST00000373602 ZC3H12CQ9C0D7 883 aaKnown RBP27.66■■■□□ 2.02
CCDC28B-201ENST00000373602 XDHP47989 1333 aa27.66■■■□□ 2.02
CCDC28B-201ENST00000373602 F6X3S4 739 aa27.65■■■□□ 2.02
CCDC28B-201ENST00000373602 PSMD14O00487 310 aa27.65■■■□□ 2.02
CCDC28B-201ENST00000373602 BSDC1Q9NW68 430 aaPredicted RBP27.65■■■□□ 2.02
CCDC28B-201ENST00000373602 BEND3Q5T5X7 828 aa27.64■■■□□ 2.02
CCDC28B-201ENST00000373602 DPF2Q92785 391 aa27.63■■■□□ 2.01
CCDC28B-201ENST00000373602 KCNQ5Q9NR82 932 aa27.63■■■□□ 2.01
CCDC28B-201ENST00000373602 MKRN1Q9UHC7 482 aaKnown RBP27.63■■■□□ 2.01
CCDC28B-201ENST00000373602 CNOT7Q9UIV1 285 aaKnown RBP27.63■■■□□ 2.01
CCDC28B-201ENST00000373602 CSF1RP07333 972 aa27.62■■■□□ 2.01
CCDC28B-201ENST00000373602 ATP2B4P23634 1241 aa27.62■■■□□ 2.01
CCDC28B-201ENST00000373602 ZBTB12Q9Y330 459 aaPredicted RBP27.62■■■□□ 2.01
CCDC28B-201ENST00000373602 CNTNAP1P78357 1384 aa27.61■■■□□ 2.01
CCDC28B-201ENST00000373602 PGAP2Q9UHJ9 254 aa27.61■■■□□ 2.01
CCDC28B-201ENST00000373602 MINPP1Q9UNW1 487 aa27.61■■■□□ 2.01
CCDC28B-201ENST00000373602 SHTN1A0MZ66 631 aa27.6■■■□□ 2.01
CCDC28B-201ENST00000373602 E9PSI1 815 aa27.6■■■□□ 2.01
CCDC28B-201ENST00000373602 H7C1D1 291 aa27.6■■■□□ 2.01
CCDC28B-201ENST00000373602 RPS12P25398 132 aaKnown RBP27.6■■■□□ 2.01
CCDC28B-201ENST00000373602 MICALL2Q8IY33 904 aa27.6■■■□□ 2.01
CCDC28B-201ENST00000373602 ITGA6P23229 1130 aa27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 IGHMBP2P38935 993 aaKnown RBP27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 HIRAP54198 1017 aaPredicted RBP27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 FAM161AQ3B820 660 aa27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 TRPM4Q8TD43 1214 aa27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 ZC3H15Q8WU90 426 aaKnown RBP27.59■■■□□ 2.01
CCDC28B-201ENST00000373602 G3V3G9 751 aa27.58■■■□□ 2.01
CCDC28B-201ENST00000373602 CCER2I3L3R5 266 aa27.58■■■□□ 2.01
CCDC28B-201ENST00000373602 DCAF8Q5TAQ9 597 aa27.58■■■□□ 2.01
CCDC28B-201ENST00000373602 SPEF2Q9C093 1822 aa27.57■■■□□ 2
CCDC28B-201ENST00000373602 SCN9AQ15858 1988 aa27.57■■■□□ 2
CCDC28B-201ENST00000373602 VIL1P09327 827 aaKnown RBP27.57■■■□□ 2
CCDC28B-201ENST00000373602 FMR1Q06787 632 aaKnown RBP eCLIP27.57■■■□□ 2
CCDC28B-201ENST00000373602 WTIPA6NIX2 430 aaPredicted RBP27.56■■■□□ 2
CCDC28B-201ENST00000373602 FOXO4P98177 505 aa27.56■■■□□ 2
CCDC28B-201ENST00000373602 SLFN5Q08AF3 891 aa27.56■■■□□ 2
CCDC28B-201ENST00000373602 RASSF10A6NK89 507 aa27.55■■■□□ 2
CCDC28B-201ENST00000373602 TRAF5O00463 557 aa27.55■■■□□ 2
CCDC28B-201ENST00000373602 ALDH1L1O75891 902 aa27.55■■■□□ 2
CCDC28B-201ENST00000373602 CCT4P50991 539 aaKnown RBP27.55■■■□□ 2
CCDC28B-201ENST00000373602 MED23Q9ULK4 1368 aa27.55■■■□□ 2
CCDC28B-201ENST00000373602 GRM8O00222 908 aa27.54■■■□□ 2
CCDC28B-201ENST00000373602 SAMD7Q7Z3H4 446 aa27.54■■■□□ 2
CCDC28B-201ENST00000373602 PODNQ7Z5L7 613 aa27.54■■■□□ 2
CCDC28B-201ENST00000373602 MRPL50Q8N5N7 158 aaKnown RBP27.54■■■□□ 2
CCDC28B-201ENST00000373602 MPHOSPH8Q99549 860 aa27.54■■■□□ 2
CCDC28B-201ENST00000373602 ANKRD18BA2A2Z9 1011 aa27.53■■■□□ 2
CCDC28B-201ENST00000373602 HSPA1AP0DMV8 641 aaKnown RBP27.53■■■□□ 2
CCDC28B-201ENST00000373602 HSPA1BP0DMV9 641 aaKnown RBP27.53■■■□□ 2
CCDC28B-201ENST00000373602 VEGFBP49765 207 aa27.53■■■□□ 2
CCDC28B-201ENST00000373602 SLC4A10Q6U841 1118 aa27.53■■■□□ 2
CCDC28B-201ENST00000373602 SRCIN1Q9C0H9 1055 aa27.53■■■□□ 2
CCDC28B-201ENST00000373602 LEMD3Q9Y2U8 911 aa27.53■■■□□ 2
CCDC28B-201ENST00000373602 ZNF609O15014 1411 aa27.52■■■□□ 2
CCDC28B-201ENST00000373602 DEFB115Q30KQ5 88 aa27.52■■■□□ 2
CCDC28B-201ENST00000373602 CST9Q5W186 159 aa27.52■■■□□ 2
CCDC28B-201ENST00000373602 GLIS2Q9BZE0 524 aaPredicted RBP27.52■■■□□ 2
CCDC28B-201ENST00000373602 ANKRD2Q9GZV1 360 aa27.52■■■□□ 2
CCDC28B-201ENST00000373602 ABT1Q9ULW3 272 aaKnown RBP27.52■■■□□ 2
CCDC28B-201ENST00000373602 TRPM7Q96QT4 1865 aa27.51■■□□□ 1.99
CCDC28B-201ENST00000373602 C9orf78Q9NZ63 289 aaPredicted RBP27.51■■□□□ 1.99
CCDC28B-201ENST00000373602 EGFRP00533 1210 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 IFIT5Q13325 482 aaKnown RBP27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 TBC1D10BQ4KMP7 808 aaPredicted RBP27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 EPHA10Q5JZY3 1008 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 RSBN1LQ6PCB5 846 aaPredicted RBP27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 CDC37L1Q7L3B6 337 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 AGBL3Q8NEM8 1001 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 CDCA7LQ96GN5 454 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 PSME4Q14997 1843 aa27.5■■□□□ 1.99
CCDC28B-201ENST00000373602 LMBR1LQ6UX01 489 aa27.49■■□□□ 1.99
CCDC28B-201ENST00000373602 ZNF804BA4D1E1 1349 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 USP17L3A6NCW0 530 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 USP17L4A6NCW7 530 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 CHRNDQ07001 517 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 USP17L1Q7RTZ2 530 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 TRMT2AQ8IZ69 625 aaKnown RBP27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 SSH1Q8WYL5 1049 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 GMLQ99445 158 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 CHMP3Q9Y3E7 222 aa27.48■■□□□ 1.99
CCDC28B-201ENST00000373602 PTPRCP08575 1304 aa27.47■■□□□ 1.99
CCDC28B-201ENST00000373602 RBM26Q5T8P6 1007 aaKnown RBP27.47■■□□□ 1.99
CCDC28B-201ENST00000373602 TXNRD3Q86VQ6 643 aa27.47■■□□□ 1.99
CCDC28B-201ENST00000373602 COA1Q9GZY4 146 aa27.47■■□□□ 1.99
CCDC28B-201ENST00000373602 CELF2O95319 508 aaKnown RBP27.46■■□□□ 1.99
CCDC28B-201ENST00000373602 ZNF280AP59817 542 aaPredicted RBP27.46■■□□□ 1.99
CCDC28B-201ENST00000373602 KIF4BQ2VIQ3 1234 aa27.46■■□□□ 1.99
CCDC28B-201ENST00000373602 IFFO2Q5TF58 517 aa27.46■■□□□ 1.99
CCDC28B-201ENST00000373602 TLL2Q9Y6L7 1015 aa27.46■■□□□ 1.99
CCDC28B-201ENST00000373602 USP48Q86UV5 1035 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms