RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 LRP10Q7Z4F1 713 aa19.5■□□□□ 0.71
VAMP4-202ENST00000367740 CFHR5Q9BXR6 569 aa19.5■□□□□ 0.71
VAMP4-202ENST00000367740 R3HDMLQ9H3Y0 253 aa19.5■□□□□ 0.71
VAMP4-202ENST00000367740 ZNF609O15014 1411 aa19.5■□□□□ 0.71
VAMP4-202ENST00000367740 DOK7Q18PE1 504 aa19.49■□□□□ 0.71
VAMP4-202ENST00000367740 POLLQ9UGP5 575 aa19.49■□□□□ 0.71
VAMP4-202ENST00000367740 TRIOBPQ9H2D6 2365 aa19.49■□□□□ 0.71
VAMP4-202ENST00000367740 ERBB4Q15303 1308 aa19.49■□□□□ 0.71
VAMP4-202ENST00000367740 LAMB1P07942 1786 aa19.48■□□□□ 0.71
VAMP4-202ENST00000367740 UBE2Q2LH0YL09 131 aa19.48■□□□□ 0.71
VAMP4-202ENST00000367740 VIL1P09327 827 aaKnown RBP19.48■□□□□ 0.71
VAMP4-202ENST00000367740 SCARF1Q14162 830 aa19.48■□□□□ 0.71
VAMP4-202ENST00000367740 NSFL1CQ9UNZ2 370 aaKnown RBP19.48■□□□□ 0.71
VAMP4-202ENST00000367740 COLQQ9Y215 455 aaPredicted RBP19.48■□□□□ 0.71
VAMP4-202ENST00000367740 RANBP2P49792 3224 aaKnown RBP19.48■□□□□ 0.71
VAMP4-202ENST00000367740 ZNF280AP59817 542 aaPredicted RBP19.47■□□□□ 0.71
VAMP4-202ENST00000367740 INTS3Q68E01 1043 aaKnown RBP19.47■□□□□ 0.71
VAMP4-202ENST00000367740 NLRP10Q86W26 655 aa19.47■□□□□ 0.71
VAMP4-202ENST00000367740 THUMPD2Q9BTF0 503 aaKnown RBP19.47■□□□□ 0.71
VAMP4-202ENST00000367740 CEP290O15078 2479 aa19.47■□□□□ 0.71
VAMP4-202ENST00000367740 PITPNM2Q9BZ72 1349 aa19.47■□□□□ 0.71
VAMP4-202ENST00000367740 COL6A3P12111 3177 aa19.46■□□□□ 0.71
VAMP4-202ENST00000367740 C6orf229H3BNL8 230 aa19.46■□□□□ 0.71
VAMP4-202ENST00000367740 GPSM2P81274 684 aa19.46■□□□□ 0.71
VAMP4-202ENST00000367740 MKRN3Q13064 507 aaKnown RBP19.46■□□□□ 0.71
VAMP4-202ENST00000367740 CNGB1Q14028 1251 aaPredicted RBP19.46■□□□□ 0.71
VAMP4-202ENST00000367740 SCAF8Q9UPN6 1271 aaKnown RBP19.46■□□□□ 0.71
VAMP4-202ENST00000367740 A0A0C4DFX4 3053 aa19.45■□□□□ 0.7
VAMP4-202ENST00000367740 U2AF1L5P0DN76 240 aaPredicted RBP19.45■□□□□ 0.7
VAMP4-202ENST00000367740 U2AF1Q01081 240 aaKnown RBP eCLIP19.45■□□□□ 0.7
VAMP4-202ENST00000367740 SREBF2Q12772 1141 aa19.45■□□□□ 0.7
VAMP4-202ENST00000367740 PNISRQ8TF01 805 aaKnown RBP19.45■□□□□ 0.7
VAMP4-202ENST00000367740 CELF1Q92879 486 aaKnown RBP19.45■□□□□ 0.7
VAMP4-202ENST00000367740 PDIA6Q15084 440 aa19.44■□□□□ 0.7
VAMP4-202ENST00000367740 NCBP3Q53F19 620 aaKnown RBP19.44■□□□□ 0.7
VAMP4-202ENST00000367740 OTOP1Q7RTM1 612 aa19.44■□□□□ 0.7
VAMP4-202ENST00000367740 TRMT112Q9UI30 125 aaKnown RBP19.44■□□□□ 0.7
VAMP4-202ENST00000367740 TRIM17Q9Y577 477 aa19.44■□□□□ 0.7
VAMP4-202ENST00000367740 SH3TC1Q8TE82 1336 aa19.44■□□□□ 0.7
VAMP4-202ENST00000367740 ZNF646O15015 1829 aaPredicted RBP19.44■□□□□ 0.7
VAMP4-202ENST00000367740 PROSER3Q2NL68 480 aa19.43■□□□□ 0.7
VAMP4-202ENST00000367740 PRAMEF18Q5VWM3 479 aa19.43■□□□□ 0.7
VAMP4-202ENST00000367740 TBC1D16Q8TBP0 767 aa19.43■□□□□ 0.7
VAMP4-202ENST00000367740 CFAP53Q96M91 514 aa19.43■□□□□ 0.7
VAMP4-202ENST00000367740 EYA3Q99504 573 aa19.43■□□□□ 0.7
VAMP4-202ENST00000367740 DLL1O00548 723 aa19.42■□□□□ 0.7
VAMP4-202ENST00000367740 EN2P19622 333 aaPredicted RBP19.42■□□□□ 0.7
VAMP4-202ENST00000367740 NUDCQ9Y266 331 aa19.42■□□□□ 0.7
VAMP4-202ENST00000367740 ANXA1P04083 346 aa19.41■□□□□ 0.7
VAMP4-202ENST00000367740 RSBN1LQ6PCB5 846 aaPredicted RBP19.41■□□□□ 0.7
VAMP4-202ENST00000367740 AGBL3Q8NEM8 1001 aa19.41■□□□□ 0.7
VAMP4-202ENST00000367740 MYOZ2Q9NPC6 264 aa19.41■□□□□ 0.7
VAMP4-202ENST00000367740 TTLL12Q14166 644 aaPredicted RBP19.4■□□□□ 0.7
VAMP4-202ENST00000367740 HSP90AB3PQ58FF7 597 aa19.4■□□□□ 0.7
VAMP4-202ENST00000367740 ZNF428Q96B54 188 aa19.39■□□□□ 0.69
VAMP4-202ENST00000367740 ARMC5Q96C12 935 aa19.39■□□□□ 0.69
VAMP4-202ENST00000367740 GMLQ99445 158 aa19.39■□□□□ 0.69
VAMP4-202ENST00000367740 ZC3H12CQ9C0D7 883 aaKnown RBP19.38■□□□□ 0.69
VAMP4-202ENST00000367740 PTPN22Q9Y2R2 807 aa19.38■□□□□ 0.69
VAMP4-202ENST00000367740 ALDH1A1P00352 501 aa19.37■□□□□ 0.69
VAMP4-202ENST00000367740 USP17L8P0C7I0 530 aa19.37■□□□□ 0.69
VAMP4-202ENST00000367740 PTPN12Q05209 780 aaKnown RBP19.37■□□□□ 0.69
VAMP4-202ENST00000367740 TCIRG1Q13488 830 aa19.37■□□□□ 0.69
VAMP4-202ENST00000367740 SF3B3Q15393 1217 aaKnown RBP19.37■□□□□ 0.69
VAMP4-202ENST00000367740 NECTIN2Q92692 538 aa19.37■□□□□ 0.69
VAMP4-202ENST00000367740 CUL9Q8IWT3 2517 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 NBPF9Q3BBW0 867 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 SPRYD7Q5W111 196 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 COPS6Q7L5N1 327 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 OTUD5Q96G74 571 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 PODXL2Q9NZ53 605 aa19.36■□□□□ 0.69
VAMP4-202ENST00000367740 CLSPNQ9HAW4 1339 aa19.35■□□□□ 0.69
VAMP4-202ENST00000367740 EIF2S2P20042 333 aaKnown RBP19.35■□□□□ 0.69
VAMP4-202ENST00000367740 XAGE3Q8WTP9 111 aa19.35■□□□□ 0.69
VAMP4-202ENST00000367740 G3V3G9 751 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 H0YGN5 161 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 UFL1O94874 794 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 NF2P35240 595 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 AIMP1Q12904 312 aaKnown RBP19.34■□□□□ 0.69
VAMP4-202ENST00000367740 DCAF8Q5TAQ9 597 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 IFNL1Q8IU54 200 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 CD99L2Q8TCZ2 262 aa19.34■□□□□ 0.69
VAMP4-202ENST00000367740 SLC17A8Q8NDX2 589 aa19.33■□□□□ 0.68
VAMP4-202ENST00000367740 FAM89AQ96GI7 184 aa19.33■□□□□ 0.68
VAMP4-202ENST00000367740 ERO1AQ96HE7 468 aa19.33■□□□□ 0.68
VAMP4-202ENST00000367740 IGF2BP3O00425 579 aaKnown RBP eCLIP19.32■□□□□ 0.68
VAMP4-202ENST00000367740 CAP1Q01518 475 aa19.32■□□□□ 0.68
VAMP4-202ENST00000367740 PRKG1Q13976 671 aa19.32■□□□□ 0.68
VAMP4-202ENST00000367740 LDLRAD1Q5T700 205 aa19.32■□□□□ 0.68
VAMP4-202ENST00000367740 LAMA3Q16787 3333 aa19.32■□□□□ 0.68
VAMP4-202ENST00000367740 MANSC4A6NHS7 340 aaPredicted RBP19.31■□□□□ 0.68
VAMP4-202ENST00000367740 RPS8P62241 208 aaKnown RBP19.31■□□□□ 0.68
VAMP4-202ENST00000367740 ARMC9Q7Z3E5 817 aa19.31■□□□□ 0.68
VAMP4-202ENST00000367740 ZNF333Q96JL9 665 aa19.31■□□□□ 0.68
VAMP4-202ENST00000367740 GGA1Q9UJY5 639 aa19.31■□□□□ 0.68
VAMP4-202ENST00000367740 USP17L3A6NCW0 530 aa19.3■□□□□ 0.68
VAMP4-202ENST00000367740 USP17L4A6NCW7 530 aa19.3■□□□□ 0.68
VAMP4-202ENST00000367740 WNT10BO00744 389 aa19.3■□□□□ 0.68
VAMP4-202ENST00000367740 CHRDL2Q6WN34 429 aa19.3■□□□□ 0.68
VAMP4-202ENST00000367740 USP17L1Q7RTZ2 530 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms