RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 BICD2Q8TD16 824 aa28.95■■■□□ 2.22
CPNE1-202ENST00000352393 DNAJC2Q99543 621 aaKnown RBP28.95■■■□□ 2.22
CPNE1-202ENST00000352393 ZSCAN16Q9H4T2 348 aaPredicted RBP28.95■■■□□ 2.22
CPNE1-202ENST00000352393 PKD1L3Q7Z443 1732 aa28.94■■■□□ 2.22
CPNE1-202ENST00000352393 COL18A1P39060 1754 aa28.94■■■□□ 2.22
CPNE1-202ENST00000352393 SNRPA1P09661 255 aaKnown RBP28.94■■■□□ 2.22
CPNE1-202ENST00000352393 HSP90B1P14625 803 aaKnown RBP28.94■■■□□ 2.22
CPNE1-202ENST00000352393 ZNF75DP51815 510 aa28.94■■■□□ 2.22
CPNE1-202ENST00000352393 ARHGAP30Q7Z6I6 1101 aaPredicted RBP28.94■■■□□ 2.22
CPNE1-202ENST00000352393 USP16Q9Y5T5 823 aa28.94■■■□□ 2.22
CPNE1-202ENST00000352393 PALLDQ8WX93 1383 aa28.94■■■□□ 2.22
CPNE1-202ENST00000352393 CASP7P55210 303 aa28.93■■■□□ 2.22
CPNE1-202ENST00000352393 LLPHQ9BRT6 129 aaKnown RBP28.93■■■□□ 2.22
CPNE1-202ENST00000352393 CCDC94Q9BW85 323 aaPredicted RBP28.93■■■□□ 2.22
CPNE1-202ENST00000352393 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.93■■■□□ 2.221e-6■■□□□ 12.2
CPNE1-202ENST00000352393 TATP17735 454 aaPredicted RBP28.93■■■□□ 2.22
CPNE1-202ENST00000352393 SCRN1Q12765 414 aa28.93■■■□□ 2.22
CPNE1-202ENST00000352393 STOX1Q6ZVD7 989 aa28.93■■■□□ 2.22
CPNE1-202ENST00000352393 PLEKHG2Q9H7P9 1386 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 H3BQV1 296 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 PFKFB2O60825 505 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 IFFO2Q5TF58 517 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 DDX46Q7L014 1031 aaKnown RBP28.91■■■□□ 2.22
CPNE1-202ENST00000352393 KBTBD3Q8NAB2 608 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 C1orf167Q5SNV9 1468 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 NLRP2Q9NX02 1062 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 CFAP45Q9UL16 551 aa28.91■■■□□ 2.22
CPNE1-202ENST00000352393 PIP4K2AP48426 406 aaPredicted RBP28.9■■■□□ 2.22
CPNE1-202ENST00000352393 ZC3H6P61129 1189 aaKnown RBP28.9■■■□□ 2.22
CPNE1-202ENST00000352393 DDX11Q96FC9 970 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 CAVIN2O95810 425 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 ZNF165P49910 485 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 CHAF1AQ13111 956 aaPredicted RBP28.9■■■□□ 2.22
CPNE1-202ENST00000352393 CCDC186Q7Z3E2 898 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 IFNL2Q8IZJ0 200 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 DNAJC25Q9H1X3 360 aa28.9■■■□□ 2.22
CPNE1-202ENST00000352393 TJP1Q07157 1748 aa28.89■■■□□ 2.22
CPNE1-202ENST00000352393 A0A087WZG4 1122 aa28.89■■■□□ 2.22
CPNE1-202ENST00000352393 HMGB1P09429 215 aaKnown RBP28.89■■■□□ 2.22
CPNE1-202ENST00000352393 ADD1P35611 737 aaKnown RBP28.89■■■□□ 2.22
CPNE1-202ENST00000352393 NAA16Q6N069 864 aaPredicted RBP28.89■■■□□ 2.22
CPNE1-202ENST00000352393 TTC5Q8N0Z6 440 aa28.89■■■□□ 2.22
CPNE1-202ENST00000352393 NSUN7Q8NE18 718 aaKnown RBP28.89■■■□□ 2.22
CPNE1-202ENST00000352393 BCL2L12Q9HB09 334 aa28.89■■■□□ 2.22
CPNE1-202ENST00000352393 PKNOX2Q96KN3 472 aa28.88■■■□□ 2.21
CPNE1-202ENST00000352393 TRIM5Q9C035 493 aa28.88■■■□□ 2.21
CPNE1-202ENST00000352393 PARP4Q9UKK3 1724 aaKnown RBP28.88■■■□□ 2.21
CPNE1-202ENST00000352393 NUP188Q5SRE5 1749 aa28.88■■■□□ 2.21
CPNE1-202ENST00000352393 RIOK3O14730 519 aaKnown RBP28.88■■■□□ 2.21
CPNE1-202ENST00000352393 FMNL2Q96PY5 1086 aa28.88■■■□□ 2.21
CPNE1-202ENST00000352393 LRRC2Q9BYS8 371 aa28.88■■■□□ 2.21
CPNE1-202ENST00000352393 ATP5J2-PTCD1G3V325 749 aa28.87■■■□□ 2.21
CPNE1-202ENST00000352393 PTCD1O75127 700 aaKnown RBP28.87■■■□□ 2.21
CPNE1-202ENST00000352393 ARID3AQ99856 593 aa28.87■■■□□ 2.21
CPNE1-202ENST00000352393 DHX32Q7L7V1 743 aaKnown RBP28.87■■■□□ 2.21
CPNE1-202ENST00000352393 DCAF5Q96JK2 942 aa28.87■■■□□ 2.21
CPNE1-202ENST00000352393 AGXT2Q9BYV1 514 aa28.87■■■□□ 2.21
CPNE1-202ENST00000352393 SPEF2Q9C093 1822 aa28.86■■■□□ 2.21
CPNE1-202ENST00000352393 CTDNEP1O95476 244 aa28.86■■■□□ 2.21
CPNE1-202ENST00000352393 PLBD2Q8NHP8 589 aa28.86■■■□□ 2.21
CPNE1-202ENST00000352393 DSCC1Q9BVC3 393 aa28.86■■■□□ 2.21
CPNE1-202ENST00000352393 NRBP1Q9UHY1 535 aa28.86■■■□□ 2.21
CPNE1-202ENST00000352393 CDC25BP30305 580 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 LRMPQ12912 555 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 ZSCAN25Q6NSZ9 544 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 HELLSQ9NRZ9 838 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 TICAM2Q86XR7 235 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 RCOR1Q9UKL0 485 aa28.85■■■□□ 2.21
CPNE1-202ENST00000352393 FAM177BA6PVY3 158 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 EXOSC10Q01780 885 aaKnown RBP28.84■■■□□ 2.21
CPNE1-202ENST00000352393 LMBR1LQ6UX01 489 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 DRC7Q8IY82 874 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 SALL1Q9NSC2 1324 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 PTPDC1A2A3K4 754 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 CYP27B1O15528 508 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 CTIFO43310 598 aaKnown RBP28.84■■■□□ 2.21
CPNE1-202ENST00000352393 FGD1P98174 961 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 FOXO4P98177 505 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 IQCB1Q15051 598 aa28.84■■■□□ 2.21
CPNE1-202ENST00000352393 SMAP1Q8IYB5 467 aaPredicted RBP28.84■■■□□ 2.21
CPNE1-202ENST00000352393 SARM1Q6SZW1 724 aa28.83■■■□□ 2.21
CPNE1-202ENST00000352393 ATG9AQ7Z3C6 839 aa28.83■■■□□ 2.21
CPNE1-202ENST00000352393 PAG1Q9NWQ8 432 aa28.83■■■□□ 2.21
CPNE1-202ENST00000352393 CTAGE5O15320 804 aa28.82■■■□□ 2.2
CPNE1-202ENST00000352393 GPR108Q9NPR9 543 aa28.82■■■□□ 2.2
CPNE1-202ENST00000352393 TMEM94Q12767 1356 aa28.82■■■□□ 2.2
CPNE1-202ENST00000352393 APOBRQ0VD83 1088 aa28.82■■■□□ 2.2
CPNE1-202ENST00000352393 ZMYM1Q5SVZ6 1142 aa28.82■■■□□ 2.2
CPNE1-202ENST00000352393 GOLIM4O00461 696 aa28.81■■■□□ 2.2
CPNE1-202ENST00000352393 H7C1W4 665 aa28.81■■■□□ 2.2
CPNE1-202ENST00000352393 C11orf57Q6ZUT1 292 aaPredicted RBP28.81■■■□□ 2.2
CPNE1-202ENST00000352393 ANKRD7Q92527 254 aa28.81■■■□□ 2.2
CPNE1-202ENST00000352393 GOLPH3LQ9H4A5 285 aa28.81■■■□□ 2.2
CPNE1-202ENST00000352393 CLIP2Q9UDT6 1046 aa28.81■■■□□ 2.2
CPNE1-202ENST00000352393 CEBPZQ03701 1054 aaKnown RBP28.8■■■□□ 2.2
CPNE1-202ENST00000352393 STX1AQ16623 288 aa28.8■■■□□ 2.2
CPNE1-202ENST00000352393 ATL3Q6DD88 541 aa28.8■■■□□ 2.2
CPNE1-202ENST00000352393 CCAR1Q8IX12 1150 aaKnown RBP28.8■■■□□ 2.2
CPNE1-202ENST00000352393 FTOQ9C0B1 505 aaKnown RBP eCLIP28.8■■■□□ 2.25e-10■□□□□ 9.7
CPNE1-202ENST00000352393 SLFNL1Q499Z3 407 aa28.79■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms