RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 GNAI1P63096 354 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 ANO6Q4KMQ2 910 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 LUZP1Q86V48 1076 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 SEPT12Q8IYM1 358 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 CCDC150Q8NCX0 1101 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 SMARCE1Q969G3 411 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 DONSONQ9NYP3 566 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 IMPACTQ9P2X3 320 aa9.52□□□□□ -0.88
ATG4A-201ENST00000343524 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.52□□□□□ -0.88
ATG4A-201ENST00000343524 TCHHQ07283 1943 aa9.52□□□□□ -0.89
ATG4A-201ENST00000343524 EFCAB8A8MWE9 144 aa9.52□□□□□ -0.89
ATG4A-201ENST00000343524 SLC34A2O95436 690 aa9.52□□□□□ -0.89
ATG4A-201ENST00000343524 CASTP20810 708 aaKnown RBP9.52□□□□□ -0.89
ATG4A-201ENST00000343524 EN1Q05925 392 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-201ENST00000343524 CEP89Q96ST8 783 aa9.52□□□□□ -0.89
ATG4A-201ENST00000343524 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.52□□□□□ -0.89
ATG4A-201ENST00000343524 SOS2Q07890 1332 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-201ENST00000343524 NPHP3Q7Z494 1330 aa9.52□□□□□ -0.89
ATG4A-201ENST00000343524 DISP2A7MBM2 1401 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 GOLGA6L4A6NEF3 574 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 POLR3GO15318 223 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 CPP00450 1065 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 SYT1P21579 422 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 ZNF165P49910 485 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 TRDNQ13061 729 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 ERCC6LQ2NKX8 1250 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 FOXD4L6Q3SYB3 417 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 MCTP2Q6DN12 878 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 FOXD4L3Q6VB84 417 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 EFCAB13Q8IY85 973 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 SCAND2PQ9GZW5 306 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 CLSTN2Q9H4D0 955 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 MED4Q9NPJ6 270 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 ANO2Q9NQ90 1003 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 ORC3Q9UBD5 711 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 AOX1Q06278 1338 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 CAMTA1Q9Y6Y1 1673 aa9.51□□□□□ -0.89
ATG4A-201ENST00000343524 MARF1Q9Y4F3 1742 aaKnown RBP9.51□□□□□ -0.89
ATG4A-201ENST00000343524 CCDC69A6NI79 296 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 SATB1Q01826 763 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 SMC1AQ14683 1233 aaKnown RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 CCDC93Q567U6 631 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 KRT27Q7Z3Y8 459 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 UNC5CLQ8IV45 518 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 MSL3Q8N5Y2 521 aaKnown RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 ZSCAN31Q96LW9 406 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 SH2B1Q9NRF2 756 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 LIMCH1Q9UPQ0 1083 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 TTC41PQ6P2S7 1318 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 CCDC196A0A1B0GTZ2 297 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 TRIM66O15016 1216 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 CTAGE5O15320 804 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 ONECUT3O60422 494 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 VAMP4O75379 141 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 EIF3JO75822 258 aaKnown RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 PDCP20941 246 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 PDE1AP54750 535 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 CCZ1BP86790 482 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 CCZ1P86791 482 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 DOK7Q18PE1 504 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 MMS22LQ6ZRQ5 1243 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 NFATC2IPQ8NCF5 419 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 SLC52A1Q9NWF4 448 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 PPP1R1BQ9UD71 204 aaPredicted RBP9.5□□□□□ -0.89
ATG4A-201ENST00000343524 NRBP1Q9UHY1 535 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 DNAI1Q9UI46 699 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 ADGRB1O14514 1584 aa9.5□□□□□ -0.89
ATG4A-201ENST00000343524 ADAMTS13Q76LX8 1427 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 ATP6V1AP38606 617 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 GSCP56915 257 aaPredicted RBP9.49□□□□□ -0.89
ATG4A-201ENST00000343524 CEP85Q6P2H3 762 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 NOL8Q76FK4 1167 aaKnown RBP9.49□□□□□ -0.89
ATG4A-201ENST00000343524 GPR161Q8N6U8 529 aaKnown RBP9.49□□□□□ -0.89
ATG4A-201ENST00000343524 ARFGAP3Q9NP61 516 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 PHF8Q9UPP1 1060 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 CPSF1Q10570 1443 aaKnown RBP9.49□□□□□ -0.89
ATG4A-201ENST00000343524 RGPD1P0DJD0 1748 aa9.49□□□□□ -0.89
ATG4A-201ENST00000343524 FCHSD2O94868 740 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 HSPA4P34932 840 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 LMAN1P49257 510 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 HDGFP51858 240 aaKnown RBP9.48□□□□□ -0.89
ATG4A-201ENST00000343524 LRRFIP1Q32MZ4 808 aaKnown RBP9.48□□□□□ -0.89
ATG4A-201ENST00000343524 CCDC144BQ3MJ40 725 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 CCDC144CPQ8IYA2 1237 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 CARD10Q9BWT7 1032 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 TMX1Q9H3N1 280 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 CXorf56Q9H5V9 222 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 TTC21AQ8NDW8 1320 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 YTHDC2Q9H6S0 1430 aaKnown RBP9.48□□□□□ -0.89
ATG4A-201ENST00000343524 SLIT2O94813 1529 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 TUBB4BP68371 445 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 DNM1Q05193 864 aaKnown RBP9.48□□□□□ -0.89
ATG4A-201ENST00000343524 STX1AQ16623 288 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 GPATCH11Q8N954 259 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 ANKRD20A12PQ8NF67 263 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 ZBTB9Q96C00 473 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 DRC1Q96MC2 740 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 OSBPL5Q9H0X9 879 aaPredicted RBP9.48□□□□□ -0.89
ATG4A-201ENST00000343524 RBM28Q9NW13 759 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms