RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 CCDC158Q5M9N0 1113 aa27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 TTC39AQ5SRH9 613 aa27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 KBTBD3Q8NAB2 608 aa27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 FKBP4Q02790 459 aaKnown RBP eCLIP27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 ERFEQ4G0M1 354 aa27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 VGLL2Q8N8G2 317 aa27.04■■□□□ 1.92
PDLIM2-203ENST00000339162 SBF2Q86WG5 1849 aa27.03■■□□□ 1.92
PDLIM2-203ENST00000339162 BCORQ6W2J9 1755 aa27.03■■□□□ 1.92
PDLIM2-203ENST00000339162 RTCBQ9Y3I0 505 aaKnown RBP27.03■■□□□ 1.92
PDLIM2-203ENST00000339162 SCARF1Q14162 830 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 CCDC129Q6ZRS4 1044 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 IL17RAQ96F46 866 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 RBM8AQ9Y5S9 174 aaKnown RBP27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 MED23Q9ULK4 1368 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 PHF14O94880 888 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 KCNJ4P48050 445 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 NARFQ9UHQ1 456 aa27.02■■□□□ 1.92
PDLIM2-203ENST00000339162 PDE8BO95263 885 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 CCDC152Q4G0S7 254 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 MAP4K1Q92918 833 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 BCL11BQ9C0K0 894 aaPredicted RBP27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 LRRC4BQ9NT99 713 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 DDX60Q8IY21 1712 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 ZPR1O75312 459 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 PI16Q6UXB8 463 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 C3orf67Q6ZVT6 689 aa27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 ARHGEF1Q92888 912 aaKnown RBP27.01■■□□□ 1.91
PDLIM2-203ENST00000339162 SNAP23O00161 211 aa27■■□□□ 1.91
PDLIM2-203ENST00000339162 NECTIN1Q15223 517 aa27■■□□□ 1.91
PDLIM2-203ENST00000339162 MPHOSPH8Q99549 860 aa27■■□□□ 1.91
PDLIM2-203ENST00000339162 CPA1P15085 419 aa27■■□□□ 1.91
PDLIM2-203ENST00000339162 TAF5LO75529 589 aa26.99■■□□□ 1.91
PDLIM2-203ENST00000339162 ADCK5Q3MIX3 580 aa26.99■■□□□ 1.91
PDLIM2-203ENST00000339162 GTF2E1P29083 439 aaPredicted RBP26.98■■□□□ 1.91
PDLIM2-203ENST00000339162 TMX3Q96JJ7 454 aa26.98■■□□□ 1.91
PDLIM2-203ENST00000339162 FAM196AQ6ZSG2 479 aa26.98■■□□□ 1.91
PDLIM2-203ENST00000339162 KRT27Q7Z3Y8 459 aa26.98■■□□□ 1.91
PDLIM2-203ENST00000339162 ZGPATQ8N5A5 531 aaKnown RBP26.98■■□□□ 1.91
PDLIM2-203ENST00000339162 CREB3L3Q68CJ9 461 aa26.97■■□□□ 1.91
PDLIM2-203ENST00000339162 CCDC24Q8N4L8 307 aa26.97■■□□□ 1.91
PDLIM2-203ENST00000339162 LY75O60449 1722 aa26.97■■□□□ 1.91
PDLIM2-203ENST00000339162 TRIM37O94972 964 aa26.97■■□□□ 1.91
PDLIM2-203ENST00000339162 ZAP70P43403 619 aa26.97■■□□□ 1.91
PDLIM2-203ENST00000339162 HSP90B1P14625 803 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 CASTP20810 708 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 MCMDC2Q4G0Z9 681 aa26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 SETDB2Q96T68 719 aa26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 RFX7Q2KHR2 1363 aa26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 MROH5Q6ZUA9 1318 aa26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 JAKMIP1Q96N16 626 aaKnown RBP26.96■■□□□ 1.91
PDLIM2-203ENST00000339162 LARP6Q9BRS8 491 aaKnown RBP26.95■■□□□ 1.9
PDLIM2-203ENST00000339162 TAF6LQ9Y6J9 622 aa26.95■■□□□ 1.9
PDLIM2-203ENST00000339162 SLC27A2O14975 620 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 IGHMBP2P38935 993 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 MCAMP43121 646 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 SCN7AQ01118 1682 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 TAF1LQ8IZX4 1826 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 COL4A1P02462 1669 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 PUM3Q15397 648 aaKnown RBP26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 LRP5O75197 1615 aa26.94■■□□□ 1.9
PDLIM2-203ENST00000339162 ABCC12Q96J65 1359 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 RFC4P35249 363 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 MCM2P49736 904 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 TRAPPC3LQ5T215 181 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 KCNB2Q92953 911 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 CIZ1Q9ULV3 898 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 ZKSCAN1P17029 563 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 PHKA1P46020 1223 aa26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 COL9A3Q14050 684 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 NBPF5PQ86XG9 351 aaPredicted RBP26.93■■□□□ 1.9
PDLIM2-203ENST00000339162 CCDC102BQ68D86 513 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 LPIN2Q92539 896 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 C4BP0C0L5 1744 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 BRWD3Q6RI45 1802 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 RNF113AO15541 343 aaKnown RBP26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 FGFR2P21802 821 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 TTC14Q96N46 770 aa26.92■■□□□ 1.9
PDLIM2-203ENST00000339162 ZMYM1Q5SVZ6 1142 aa26.91■■□□□ 1.9
PDLIM2-203ENST00000339162 TNPO1Q92973 898 aaKnown RBP26.91■■□□□ 1.9
PDLIM2-203ENST00000339162 RTL9Q8NET4 1388 aa26.91■■□□□ 1.9
PDLIM2-203ENST00000339162 AK2P54819 239 aa26.9■■□□□ 1.9
PDLIM2-203ENST00000339162 VPS53Q5VIR6 699 aa26.9■■□□□ 1.9
PDLIM2-203ENST00000339162 LAMB2P55268 1798 aa26.9■■□□□ 1.9
PDLIM2-203ENST00000339162 SPEF2Q9C093 1822 aa26.9■■□□□ 1.9
PDLIM2-203ENST00000339162 RAB3GAP1Q15042 981 aa26.9■■□□□ 1.9
PDLIM2-203ENST00000339162 CHRNDQ07001 517 aa26.89■■□□□ 1.9
PDLIM2-203ENST00000339162 HELLSQ9NRZ9 838 aa26.89■■□□□ 1.9
PDLIM2-203ENST00000339162 RGL2O15211 777 aa26.89■■□□□ 1.89
PDLIM2-203ENST00000339162 SF3B3Q15393 1217 aaKnown RBP26.89■■□□□ 1.89
PDLIM2-203ENST00000339162 MAST3O60307 1309 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 SSFA2P28290 1259 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 PKP1Q13835 747 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 CDC5LQ99459 802 aaKnown RBP26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 NYXQ9GZU5 481 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 ZSWIM6Q9HCJ5 1215 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 M0R2C6 588 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 SLC5A1P13866 664 aa26.88■■□□□ 1.89
PDLIM2-203ENST00000339162 RNF20Q5VTR2 975 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms