RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PDE8BO95263 885 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 C3orf67Q6ZVT6 689 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 RFX7Q2KHR2 1363 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 NFIXQ14938 502 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 ATP2B3Q16720 1220 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 XAGE2Q96GT9 111 aa18.77■□□□□ 0.6
LIMS1-202ENST00000338045 RGPD3A6NKT7 1758 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-202ENST00000338045 RGPD4Q7Z3J3 1758 aa18.76■□□□□ 0.59
LIMS1-202ENST00000338045 GYS1P13807 737 aa18.76■□□□□ 0.59
LIMS1-202ENST00000338045 GTF2E1P29083 439 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-202ENST00000338045 BECN1Q14457 450 aa18.76■□□□□ 0.59
LIMS1-202ENST00000338045 CDC5LQ99459 802 aaKnown RBP18.76■□□□□ 0.59
LIMS1-202ENST00000338045 MPHOSPH8Q99549 860 aa18.76■□□□□ 0.59
LIMS1-202ENST00000338045 DIAPH3Q9NSV4 1193 aa18.76■□□□□ 0.59
LIMS1-202ENST00000338045 ADORA1P30542 326 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 IGHMBP2P38935 993 aaKnown RBP18.75■□□□□ 0.59
LIMS1-202ENST00000338045 TICAM2Q86XR7 235 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 RUFY2Q8WXA3 655 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 AKT1S1Q96B36 256 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 CASZ1Q86V15 1759 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 FGFR2P21802 821 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 CWC27Q6UX04 472 aaKnown RBP18.75■□□□□ 0.59
LIMS1-202ENST00000338045 SNRKQ9NRH2 765 aa18.75■□□□□ 0.59
LIMS1-202ENST00000338045 CCDC158Q5M9N0 1113 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 EDC3Q96F86 508 aaKnown RBP18.74■□□□□ 0.59
LIMS1-202ENST00000338045 NLRP3Q96P20 1036 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 FSD1Q9BTV5 496 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 TBC1D2Q9BYX2 928 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 ANO2Q9NQ90 1003 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 COL4A1P02462 1669 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 SPEF2Q9C093 1822 aa18.74■□□□□ 0.59
LIMS1-202ENST00000338045 PUM3Q15397 648 aaKnown RBP18.73■□□□□ 0.59
LIMS1-202ENST00000338045 RAD50Q92878 1312 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 IFIT1P09914 478 aaKnown RBP18.73■□□□□ 0.59
LIMS1-202ENST00000338045 TM4SF1P30408 202 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 SLC4A3P48751 1232 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 ZNF827Q17R98 1081 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 LPIN2Q92539 896 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 SNX21Q969T3 373 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 IL17RAQ96F46 866 aa18.73■□□□□ 0.59
LIMS1-202ENST00000338045 ZNF512BQ96KM6 892 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-202ENST00000338045 DNAJC2Q99543 621 aaKnown RBP18.73■□□□□ 0.59
LIMS1-202ENST00000338045 KBTBD3Q8NAB2 608 aa18.72■□□□□ 0.59
LIMS1-202ENST00000338045 LSG1Q9H089 658 aaKnown RBP18.72■□□□□ 0.59
LIMS1-202ENST00000338045 NDUFB9Q9Y6M9 179 aa18.72■□□□□ 0.59
LIMS1-202ENST00000338045 ARAP2Q8WZ64 1704 aa18.72■□□□□ 0.59
LIMS1-202ENST00000338045 GORABQ5T7V8 394 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 ANKRD18AQ8IVF6 992 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 BSDC1Q9NW68 430 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-202ENST00000338045 PAG1Q9NWQ8 432 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 NMIQ13287 307 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-202ENST00000338045 RABEP1Q15276 862 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 TTC39AQ5SRH9 613 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 FAM227BQ96M60 508 aa18.71■□□□□ 0.59
LIMS1-202ENST00000338045 ANAPC15P60006 121 aa18.7■□□□□ 0.58
LIMS1-202ENST00000338045 DDX46Q7L014 1031 aaKnown RBP18.7■□□□□ 0.58
LIMS1-202ENST00000338045 CNBD1Q8NA66 436 aa18.7■□□□□ 0.58
LIMS1-202ENST00000338045 HELBQ8NG08 1087 aaPredicted RBP18.7■□□□□ 0.58
LIMS1-202ENST00000338045 TNRC6CQ9HCJ0 1690 aaKnown RBP18.7■□□□□ 0.58
LIMS1-202ENST00000338045 MED23Q9ULK4 1368 aa18.7■□□□□ 0.58
LIMS1-202ENST00000338045 MCCP23508 829 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 CHRNDQ07001 517 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 TFCP2L1Q9NZI6 479 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 A0A0D9SFI3 127 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 GOLIM4O00461 696 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 SLC5A1P13866 664 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 HSPA4P34932 840 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 PRR5LQ6MZQ0 368 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 KIAA1211Q6ZU35 1233 aa18.69■□□□□ 0.58
LIMS1-202ENST00000338045 CELF1Q92879 486 aaKnown RBP18.69■□□□□ 0.58
LIMS1-202ENST00000338045 SCARF1Q14162 830 aa18.68■□□□□ 0.58
LIMS1-202ENST00000338045 CCDC24Q8N4L8 307 aa18.68■□□□□ 0.58
LIMS1-202ENST00000338045 FLAD1Q8NFF5 587 aa18.68■□□□□ 0.58
LIMS1-202ENST00000338045 TAF5LO75529 589 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 SERPINB2P05120 415 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 ARID4AP29374 1257 aaPredicted RBP18.67■□□□□ 0.58
LIMS1-202ENST00000338045 RPS8P62241 208 aaKnown RBP18.67■□□□□ 0.58
LIMS1-202ENST00000338045 CCDC102BQ68D86 513 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 COL23A1Q86Y22 540 aaPredicted RBP18.67■□□□□ 0.58
LIMS1-202ENST00000338045 A0A1B0GUL6 1792 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 TAF1P21675 1872 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 NPHP1O15259 732 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 MINPP1Q9UNW1 487 aa18.67■□□□□ 0.58
LIMS1-202ENST00000338045 AKAP11Q9UKA4 1901 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 POLRMTO00411 1230 aaKnown RBP18.66■□□□□ 0.58
LIMS1-202ENST00000338045 UQCRFS1P1P0C7P4 283 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 MCAMP43121 646 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 DDR1Q08345 913 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 HSCBQ8IWL3 235 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 ANTXR1Q9H6X2 564 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 PALD1Q9ULE6 856 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 CCDC171Q6TFL3 1326 aa18.66■□□□□ 0.58
LIMS1-202ENST00000338045 PHKA1P46020 1223 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 FKBP4Q02790 459 aaKnown RBP eCLIP18.65■□□□□ 0.58
LIMS1-202ENST00000338045 PTH1RQ03431 593 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 SNAP23O00161 211 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 ZAP70P43403 619 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 UBE4AQ14139 1066 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 CRY2Q49AN0 593 aa18.65■□□□□ 0.58
LIMS1-202ENST00000338045 NLGN1Q8N2Q7 840 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms