RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 UBA7P41226 1012 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 METAP2P50579 478 aaKnown RBP eCLIP11.14□□□□□ -0.63
COL4A6-201ENST00000334504 SPAG5Q96R06 1193 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 CCDC172P0C7W6 258 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 RRS1Q15050 365 aaKnown RBP11.14□□□□□ -0.63
COL4A6-201ENST00000334504 SYCP3Q8IZU3 236 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 UTP14AQ9BVJ6 771 aaKnown RBP11.14□□□□□ -0.63
COL4A6-201ENST00000334504 CCDC25Q86WR0 208 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 IQCA1Q86XH1 822 aa11.14□□□□□ -0.63
COL4A6-201ENST00000334504 F6X3S4 739 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 FAM184BQ9ULE4 1060 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 RTL1A6NKG5 1358 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 IGHMBP2P38935 993 aaKnown RBP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 RAB3GAP1Q15042 981 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 TMEM67Q5HYA8 995 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 MYCBPQ99417 103 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 FERMT1Q9BQL6 677 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 ZNF287Q9HBT7 754 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 RPGRIP1LQ68CZ1 1315 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 NEDD9Q14511 834 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 ELF2Q15723 593 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 MYRIPQ8NFW9 859 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 TRIM27P14373 513 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 GJC1P36383 396 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 PRPHP41219 470 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 KCNG4Q8TDN1 519 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 LMBR1Q8WVP7 490 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 CASQ2O14958 399 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 ARL1P40616 181 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 ARID5AQ03989 594 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 SPAG1Q07617 926 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 MCM10Q7L590 875 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 MICU3Q86XE3 530 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 C16orf71Q8IYS4 520 aaPredicted RBP11.13□□□□□ -0.63
COL4A6-201ENST00000334504 PPP1R9BQ96SB3 815 aa11.13□□□□□ -0.63
COL4A6-201ENST00000334504 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 TSNAXIP1Q2TAA8 658 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 TMCO4Q5TGY1 634 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 TUBBP07437 444 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 GBP7Q8N8V2 638 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-201ENST00000334504 CUL5Q93034 780 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 GOLGA6CA6NDK9 693 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 ATP2A1O14983 1001 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 GOLGA6DP0CG33 693 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 MARCKSP29966 332 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-201ENST00000334504 SNX21Q969T3 373 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 MYD88Q99836 296 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 GOLGA6AQ9NYA3 693 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 KIF21BO75037 1637 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 OAS2P29728 719 aaKnown RBP11.12□□□□□ -0.63
COL4A6-201ENST00000334504 STAT6P42226 847 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 HAND2P61296 217 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 DZIP1Q86YF9 867 aaKnown RBP11.12□□□□□ -0.63
COL4A6-201ENST00000334504 VCX3BQ9H321 246 aa11.12□□□□□ -0.63
COL4A6-201ENST00000334504 RNF41Q9H4P4 317 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-201ENST00000334504 PABPN1LA6NDY0 278 aaKnown RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 GCKP35557 465 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 TNNC1P63316 161 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 UBXN1Q04323 297 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 FLIIQ13045 1269 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 STXBP4Q6ZWJ1 553 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 CCDC110Q8TBZ0 833 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 ZNF444Q8N0Y2 327 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 CCDC42Q96M95 316 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 LRRC27Q9C0I9 530 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 RBSNQ9H1K0 784 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 SUDS3Q9H7L9 328 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 MTRF1LQ9UGC7 380 aaKnown RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 ZC3H6P61129 1189 aaKnown RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 RNF168Q8IYW5 571 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 VCXQ9H320 206 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 GNAT3A8MTJ3 354 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 ERCC3P19447 782 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 MAP3K12Q12852 859 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 LRCH2Q5VUJ6 765 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 TXNDC2Q86VQ3 553 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 FMNL3Q8IVF7 1028 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 HMG20BQ9P0W2 317 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 C8orf34Q49A92 452 aa11.11□□□□□ -0.63
COL4A6-201ENST00000334504 C17orf53Q8N3J3 647 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-201ENST00000334504 ARHGAP25P42331 645 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 TTF1Q15361 905 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 CFAP157Q5JU67 520 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 NKIRAS1Q9NYS0 192 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 NSD3Q9BZ95 1437 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 NUCB1Q02818 461 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 GAPVD1Q14C86 1478 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 TRMT1LQ7Z2T5 733 aaKnown RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 ALDH3A1P30838 453 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 PPP1R7Q15435 360 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 GKAP1Q5VSY0 366 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 PNMA8AQ86V59 439 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 BRF1Q92994 677 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 BAG1Q99933 345 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 CLEC11AQ9Y240 323 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 PPARDQ03181 441 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 TAF7Q15545 349 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-201ENST00000334504 CARD6Q9BX69 1037 aa11.1□□□□□ -0.63
COL4A6-201ENST00000334504 ECHDC1Q9NTX5 307 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms