RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RFX7Q2KHR2 1363 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 WDR81Q562E7 1941 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 COL5A1P20908 1838 aaPredicted RBP2.38□□□□□ -2.03
LINC00643-201ENST00000334389 LRP3O75074 770 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 GJA8P48165 433 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 LIMK1P53667 647 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 TMF1P82094 1093 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 LMOD2Q6P5Q4 547 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 ADGRD1Q6QNK2 874 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 WBP1Q96G27 269 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 MASTLQ96GX5 879 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 CAPNS2Q96L46 248 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 BSDC1Q9NW68 430 aaPredicted RBP2.38□□□□□ -2.03
LINC00643-201ENST00000334389 MTMR10Q9NXD2 777 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 CARNS1A5YM72 827 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 FKTNO75072 461 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 PAK6Q9NQU5 681 aaPredicted RBP2.38□□□□□ -2.03
LINC00643-201ENST00000334389 RXFP3Q9NSD7 469 aa2.38□□□□□ -2.03
LINC00643-201ENST00000334389 DNAH3Q8TD57 4116 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 NCK2O43639 380 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 ADAMTS2O95450 1211 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 NBL1P41271 181 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 PTPN5P54829 565 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 AAK1Q2M2I8 961 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 TTLL6Q8N841 843 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 HOOK2Q96ED9 719 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 KRTAP4-12Q9BQ66 201 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 TNRC6BQ9UPQ9 1833 aaKnown RBP2.37□□□□□ -2.03
LINC00643-201ENST00000334389 ALDH1B1P30837 517 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 IL6STP40189 918 aaPredicted RBP2.37□□□□□ -2.03
LINC00643-201ENST00000334389 RBL2Q08999 1139 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 LCE3BQ5TA77 95 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 RGMBQ6NW40 437 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 ZFPM1Q8IX07 1006 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 RNF186Q9NXI6 227 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 DKK4Q9UBT3 224 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 DACH1Q9UI36 760 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 HCN4Q9Y3Q4 1203 aa2.37□□□□□ -2.03
LINC00643-201ENST00000334389 CENPJQ9HC77 1338 aaPredicted RBP2.37□□□□□ -2.03
LINC00643-201ENST00000334389 ZCRB1Q8TBF4 217 aaKnown RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 SPG7Q9UQ90 795 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 SUGT1Q9Y2Z0 365 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 PARP3Q9Y6F1 533 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 SCN9AQ15858 1988 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 ZMYM2Q9UBW7 1377 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 POU2F2P09086 479 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 HDLBPQ00341 1268 aaKnown RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 CBX2Q14781 532 aaPredicted RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 MAP3K21Q5TCX8 1036 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 SP8Q8IXZ3 490 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 CACTIN-AS1Q8N1I8 211 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 COL25A1Q9BXS0 654 aaPredicted RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 CCNL1Q9UK58 526 aaPredicted RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 PCDHB13Q9Y5F0 798 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 XDHP47989 1333 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 MED23Q9ULK4 1368 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 GJB1P08034 283 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 LBX1P52954 281 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 TNIP1Q15025 636 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 ZNF528Q3MIS6 628 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 LBX2Q6XYB7 198 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 LARGE2Q8N3Y3 721 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 MSL3Q8N5Y2 521 aaKnown RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 ZNF496Q96IT1 587 aaPredicted RBP2.36□□□□□ -2.03
LINC00643-201ENST00000334389 OGDHLQ9ULD0 1010 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 NR2E3Q9Y5X4 410 aa2.36□□□□□ -2.03
LINC00643-201ENST00000334389 KTN1Q86UP2 1357 aaKnown RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 ARHGAP33O14559 1287 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 RIOK3O14730 519 aaKnown RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 PFKMP08237 780 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 EPHX2P34913 555 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 RFC2P35250 354 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 SERINC3Q13530 473 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 CDC37L1Q7L3B6 337 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 KDF1Q8NAX2 398 aaPredicted RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 SAMD11Q96NU1 681 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 NYXQ9GZU5 481 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 BCS1LQ9Y276 419 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 DCDC2CA8MYV0 355 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 UPK3BL1B0FP48 263 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 UPK3BL2E5RIL1 263 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 XRCC5P13010 732 aaKnown RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 SLC5A1P13866 664 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 HSP90B1P14625 803 aaKnown RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 AXDND1Q5T1B0 1012 aaPredicted RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 CCDC174Q6PII3 467 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 TEX2Q8IWB9 1127 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 LINC00116Q8NCU8 138 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 TSPYL2Q9H2G4 693 aaPredicted RBP2.35□□□□□ -2.03
LINC00643-201ENST00000334389 GPRC5DQ9NZD1 345 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 CLSPNQ9HAW4 1339 aa2.35□□□□□ -2.03
LINC00643-201ENST00000334389 SOBPA7XYQ1 873 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 G3V3G9 751 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 HOXB7P09629 217 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 SRGNP10124 158 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 SRPK2P78362 688 aaKnown RBP2.34□□□□□ -2.03
LINC00643-201ENST00000334389 DCAF8Q5TAQ9 597 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 NELL1Q92832 810 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 GMLQ99445 158 aa2.34□□□□□ -2.03
LINC00643-201ENST00000334389 KRTAP9-8Q9BYQ0 159 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms