RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 CCAR2Q8N163 923 aaKnown RBP16.07■□□□□ 0.16
SYNE3-201ENST00000334258 KCNB2Q92953 911 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 TIGD1Q96MW7 591 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 PPFIA3O75145 1194 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 TOB2Q14106 344 aaPredicted RBP16.07■□□□□ 0.16
SYNE3-201ENST00000334258 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 PRAMEF22A3QJZ6 481 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 CHRM1P11229 460 aaPredicted RBP16.06■□□□□ 0.16
SYNE3-201ENST00000334258 PIP4K2AP48426 406 aaPredicted RBP16.06■□□□□ 0.16
SYNE3-201ENST00000334258 RBM6P78332 1123 aaKnown RBP16.06■□□□□ 0.16
SYNE3-201ENST00000334258 TRERF1Q96PN7 1200 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 SNW1Q13573 536 aaKnown RBP16.06■□□□□ 0.16
SYNE3-201ENST00000334258 ERCC6LQ2NKX8 1250 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 NYAP1Q6ZVC0 841 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 AOPEPQ8N6M6 819 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 GTF3C6Q969F1 213 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 FMNL2Q96PY5 1086 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 SDF4Q9BRK5 362 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 HOMER1Q86YM7 354 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 CEP57L1Q8IYX8 460 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 LRRC2Q9BYS8 371 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 FTOQ9C0B1 505 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNE3-201ENST00000334258 ANO10Q9NW15 660 aa16.06■□□□□ 0.16
SYNE3-201ENST00000334258 USP42Q9H9J4 1324 aaKnown RBP16.05■□□□□ 0.16
SYNE3-201ENST00000334258 SMC2O95347 1197 aa16.05■□□□□ 0.16
SYNE3-201ENST00000334258 ME1P48163 572 aa16.05■□□□□ 0.16
SYNE3-201ENST00000334258 NOL10Q9BSC4 688 aaKnown RBP16.05■□□□□ 0.16
SYNE3-201ENST00000334258 CTAGE5O15320 804 aa16.05■□□□□ 0.16
SYNE3-201ENST00000334258 SARM1Q6SZW1 724 aa16.05■□□□□ 0.16
SYNE3-201ENST00000334258 SLC39A6Q13433 755 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 SYT10Q6XYQ8 523 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 ARHGEF25Q86VW2 580 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 CHD2O14647 1828 aaKnown RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 TOPAZ1Q8N9V7 1692 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 GOLGB1Q14789 3259 aaKnown RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 NRDCO43847 1150 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 RESTQ13127 1097 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 BMS1Q14692 1282 aaKnown RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 EAF2Q96CJ1 260 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 ZSCAN16Q9H4T2 348 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 KIF2AO00139 706 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 CCZ1BP86790 482 aa16.04■□□□□ 0.16
SYNE3-201ENST00000334258 CCZ1P86791 482 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 NAT10Q9H0A0 1025 aaKnown RBP16.04■□□□□ 0.16
SYNE3-201ENST00000334258 ANKARQ7Z5J8 1434 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 CWF19L2Q2TBE0 894 aaKnown RBP16.03■□□□□ 0.16
SYNE3-201ENST00000334258 KCNH5Q8NCM2 988 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 STRN4Q9NRL3 753 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 CALCOCO1Q9P1Z2 691 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 NRKQ7Z2Y5 1582 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 GUCY1B3Q02153 619 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 Q6ZUG5 572 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 ZNF589Q86UQ0 364 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-201ENST00000334258 EDC3Q96F86 508 aaKnown RBP16.03■□□□□ 0.16
SYNE3-201ENST00000334258 NEK1Q96PY6 1258 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 MAP3K2Q9Y2U5 619 aa16.03■□□□□ 0.16
SYNE3-201ENST00000334258 GSDMDP57764 484 aa16.02■□□□□ 0.16
SYNE3-201ENST00000334258 TEFQ10587 303 aa16.02■□□□□ 0.16
SYNE3-201ENST00000334258 FSIP1Q8NA03 581 aa16.02■□□□□ 0.16
SYNE3-201ENST00000334258 TLR7Q9NYK1 1049 aaKnown RBP16.02■□□□□ 0.16
SYNE3-201ENST00000334258 KDRP35968 1356 aa16.02■□□□□ 0.15
SYNE3-201ENST00000334258 TMC6Q7Z403 805 aa16.02■□□□□ 0.15
SYNE3-201ENST00000334258 HMG20BQ9P0W2 317 aa16.02■□□□□ 0.15
SYNE3-201ENST00000334258 HDAC5Q9UQL6 1122 aa16.02■□□□□ 0.15
SYNE3-201ENST00000334258 C1orf167Q5SNV9 1468 aa16.02■□□□□ 0.15
SYNE3-201ENST00000334258 ARHGAP29Q52LW3 1261 aa16.01■□□□□ 0.15
SYNE3-201ENST00000334258 TUBGCP6Q96RT7 1819 aa16.01■□□□□ 0.15
SYNE3-201ENST00000334258 SFPQP23246 707 aaKnown RBP eCLIP16.01■□□□□ 0.15
SYNE3-201ENST00000334258 KRT32Q14532 448 aa16.01■□□□□ 0.15
SYNE3-201ENST00000334258 GOLPH3LQ9H4A5 285 aa16.01■□□□□ 0.15
SYNE3-201ENST00000334258 POLR3GO15318 223 aaPredicted RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 SAMD1Q6SPF0 538 aaPredicted RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 DHX40Q8IX18 779 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 ZNF446Q9NWS9 450 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 KCNG1Q9UIX4 513 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 EIF4A1P60842 406 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 AIMP1Q12904 312 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 SF3A1Q15459 793 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 CCDC9Q9Y3X0 531 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 CCT2P78371 535 aaKnown RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 SLFNL1Q499Z3 407 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 UBXN4Q92575 508 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 USP28Q96RU2 1077 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 BABAM1Q9NWV8 329 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16■□□□□ 0.15
SYNE3-201ENST00000334258 PXDNLA1KZ92 1463 aa16■□□□□ 0.15
SYNE3-201ENST00000334258 FMN2Q9NZ56 1722 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 GIGYF1O75420 1035 aaPredicted RBP15.99■□□□□ 0.15
SYNE3-201ENST00000334258 SASH1O94885 1247 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 C1orf141Q5JVX7 400 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 CADPS2Q86UW7 1296 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 KLHDC4Q8TBB5 520 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
SYNE3-201ENST00000334258 BTBD11A6QL63 1104 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 BIN1O00499 593 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 FAM160A1Q05DH4 1040 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 MNS1Q8NEH6 495 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 ZNF396Q96N95 335 aaPredicted RBP15.99■□□□□ 0.15
SYNE3-201ENST00000334258 IFNKQ9P0W0 207 aa15.99■□□□□ 0.15
SYNE3-201ENST00000334258 A0A0G2JS52 829 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms