RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 TAF5LO75529 589 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 QTRT2Q9H974 415 aaKnown RBP20.42■□□□□ 0.86
DDX41-201ENST00000330503 CCNL1Q9UK58 526 aaPredicted RBP20.42■□□□□ 0.86
DDX41-201ENST00000330503 RAB3GAP1Q15042 981 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 ATP2B3Q16720 1220 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 CCDC158Q5M9N0 1113 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 IL27Q8NEV9 243 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 TTC14Q96N46 770 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 SEC62Q99442 399 aaKnown RBP20.42■□□□□ 0.86
DDX41-201ENST00000330503 SEC31BQ9NQW1 1179 aa20.42■□□□□ 0.86
DDX41-201ENST00000330503 GORABQ5T7V8 394 aa20.41■□□□□ 0.86
DDX41-201ENST00000330503 CREB3L3Q68CJ9 461 aa20.41■□□□□ 0.86
DDX41-201ENST00000330503 TICAM2Q86XR7 235 aa20.41■□□□□ 0.86
DDX41-201ENST00000330503 TTC39AQ5SRH9 613 aa20.41■□□□□ 0.86
DDX41-201ENST00000330503 ZGPATQ8N5A5 531 aaKnown RBP20.41■□□□□ 0.86
DDX41-201ENST00000330503 RGL2O15211 777 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 PDE8BO95263 885 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 SCARF1Q14162 830 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 ADCK5Q3MIX3 580 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 SLFNL1Q499Z3 407 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 MCMDC2Q4G0Z9 681 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 TNPO1Q92973 898 aaKnown RBP20.4■□□□□ 0.86
DDX41-201ENST00000330503 LRP5O75197 1615 aa20.4■□□□□ 0.86
DDX41-201ENST00000330503 SLC27A2O14975 620 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 MCM4P33991 863 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 CUL4AQ13619 759 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 CCDC129Q6ZRS4 1044 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 AMIGO3Q86WK7 504 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 NARFQ9UHQ1 456 aa20.39■□□□□ 0.86
DDX41-201ENST00000330503 LY75O60449 1722 aa20.39■□□□□ 0.85
DDX41-201ENST00000330503 CCDC152Q4G0S7 254 aa20.39■□□□□ 0.85
DDX41-201ENST00000330503 TM6SF1Q9BZW5 370 aa20.39■□□□□ 0.85
DDX41-201ENST00000330503 SRP68Q9UHB9 627 aaKnown RBP20.39■□□□□ 0.85
DDX41-201ENST00000330503 RTL9Q8NET4 1388 aa20.39■□□□□ 0.85
DDX41-201ENST00000330503 GNPATO15228 680 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 CPA1P15085 419 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 ERFEQ4G0M1 354 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 USPL1Q5W0Q7 1092 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 TBC1D9BQ66K14 1250 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 CWC22Q9HCG8 908 aaKnown RBP20.38■□□□□ 0.85
DDX41-201ENST00000330503 LAMB2P55268 1798 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 SPEF2Q9C093 1822 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 HSP90B1P14625 803 aaKnown RBP20.38■□□□□ 0.85
DDX41-201ENST00000330503 FGFR2P21802 821 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 KCNJ4P48050 445 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 FKBP4Q02790 459 aaKnown RBP eCLIP20.38■□□□□ 0.85
DDX41-201ENST00000330503 ZMYM1Q5SVZ6 1142 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 NOL8Q76FK4 1167 aaKnown RBP20.38■□□□□ 0.85
DDX41-201ENST00000330503 HELBQ8NG08 1087 aaPredicted RBP20.38■□□□□ 0.85
DDX41-201ENST00000330503 ZSWIM6Q9HCJ5 1215 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 MROH5Q6ZUA9 1318 aa20.38■□□□□ 0.85
DDX41-201ENST00000330503 RNF113AO15541 343 aaKnown RBP20.37■□□□□ 0.85
DDX41-201ENST00000330503 CASTP20810 708 aaKnown RBP20.37■□□□□ 0.85
DDX41-201ENST00000330503 JAKMIP1Q96N16 626 aaKnown RBP20.37■□□□□ 0.85
DDX41-201ENST00000330503 HELLSQ9NRZ9 838 aa20.37■□□□□ 0.85
DDX41-201ENST00000330503 C3orf67Q6ZVT6 689 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 BCL11BQ9C0K0 894 aaPredicted RBP20.36■□□□□ 0.85
DDX41-201ENST00000330503 TAF6LQ9Y6J9 622 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 SCN7AQ01118 1682 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 TAF1LQ8IZX4 1826 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 SSFA2P28290 1259 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 ZAP70P43403 619 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 BICDL1Q6ZP65 573 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 ZNF512BQ96KM6 892 aaPredicted RBP20.36■□□□□ 0.85
DDX41-201ENST00000330503 ABCC12Q96J65 1359 aa20.36■□□□□ 0.85
DDX41-201ENST00000330503 ZKSCAN1P17029 563 aaPredicted RBP20.35■□□□□ 0.85
DDX41-201ENST00000330503 AK2P54819 239 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 RUFY3Q7L099 469 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 ARHGEF1Q92888 912 aaKnown RBP20.35■□□□□ 0.85
DDX41-201ENST00000330503 RTCBQ9Y3I0 505 aaKnown RBP20.35■□□□□ 0.85
DDX41-201ENST00000330503 MCAMP43121 646 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 COL9A3Q14050 684 aaPredicted RBP20.35■□□□□ 0.85
DDX41-201ENST00000330503 TSGA10IPQ3SY00 556 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 SLC10A5Q5PT55 438 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 PI16Q6UXB8 463 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 MPHOSPH8Q99549 860 aa20.35■□□□□ 0.85
DDX41-201ENST00000330503 CYP2E1P05181 493 aaPredicted RBP20.34■□□□□ 0.85
DDX41-201ENST00000330503 PUM3Q15397 648 aaKnown RBP20.34■□□□□ 0.85
DDX41-201ENST00000330503 LPIN2Q92539 896 aa20.34■□□□□ 0.85
DDX41-201ENST00000330503 LRRC4BQ9NT99 713 aa20.34■□□□□ 0.85
DDX41-201ENST00000330503 COL4A1P02462 1669 aa20.34■□□□□ 0.85
DDX41-201ENST00000330503 RPAP1Q9BWH6 1393 aaPredicted RBP20.34■□□□□ 0.85
DDX41-201ENST00000330503 AKAP11Q9UKA4 1901 aa20.34■□□□□ 0.85
DDX41-201ENST00000330503 SF3B3Q15393 1217 aaKnown RBP20.33■□□□□ 0.85
DDX41-201ENST00000330503 INTS4Q96HW7 963 aaKnown RBP20.33■□□□□ 0.85
DDX41-201ENST00000330503 CYP46A1Q9Y6A2 500 aa20.33■□□□□ 0.85
DDX41-201ENST00000330503 SNAP23O00161 211 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 ZPR1O75312 459 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 PKP1Q13835 747 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 VPS53Q5VIR6 699 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 RNF20Q5VTR2 975 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 PDRG1Q9NUG6 133 aa20.33■□□□□ 0.84
DDX41-201ENST00000330503 PHKA1P46020 1223 aa20.32■□□□□ 0.84
DDX41-201ENST00000330503 NUCB2P80303 420 aa20.32■□□□□ 0.84
DDX41-201ENST00000330503 CCDC102BQ68D86 513 aa20.32■□□□□ 0.84
DDX41-201ENST00000330503 LARP6Q9BRS8 491 aaKnown RBP20.32■□□□□ 0.84
DDX41-201ENST00000330503 U3KPZ7 1027 aaPredicted RBP20.32■□□□□ 0.84
DDX41-201ENST00000330503 IGHMBP2P38935 993 aaKnown RBP20.32■□□□□ 0.84
DDX41-201ENST00000330503 OSBP2Q969R2 916 aa20.32■□□□□ 0.84
DDX41-201ENST00000330503 SETDB2Q96T68 719 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms