RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 CDK11BP21127 795 aaKnown RBP17.22■□□□□ 0.35
PTPN9-201ENST00000306726 TTLL5Q6EMB2 1281 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 TTC6Q86TZ1 520 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 TLR7Q9NYK1 1049 aaKnown RBP17.22■□□□□ 0.35
PTPN9-201ENST00000306726 PDLIM2Q96JY6 352 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 NCOA5Q9HCD5 579 aaKnown RBP17.22■□□□□ 0.35
PTPN9-201ENST00000306726 USP21Q9UK80 565 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 DISP2A7MBM2 1401 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 TOMM22Q9NS69 142 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 TRPC5Q9UL62 973 aaPredicted RBP17.22■□□□□ 0.35
PTPN9-201ENST00000306726 SGSM2O43147 1006 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 ZNF772Q68DY9 489 aaPredicted RBP17.22■□□□□ 0.35
PTPN9-201ENST00000306726 BRF1Q92994 677 aa17.22■□□□□ 0.35
PTPN9-201ENST00000306726 AP5Z1O43299 807 aa17.21■□□□□ 0.35
PTPN9-201ENST00000306726 PROSER3Q2NL68 480 aa17.21■□□□□ 0.35
PTPN9-201ENST00000306726 PIBF1Q8WXW3 757 aa17.21■□□□□ 0.35
PTPN9-201ENST00000306726 IFNL2Q8IZJ0 200 aa17.21■□□□□ 0.34
PTPN9-201ENST00000306726 TPCN1Q9ULQ1 816 aa17.21■□□□□ 0.34
PTPN9-201ENST00000306726 BCL9LQ86UU0 1499 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 CCDC82Q8N4S0 544 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 MYRIPQ8NFW9 859 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 GLRX3O76003 335 aaKnown RBP17.2■□□□□ 0.34
PTPN9-201ENST00000306726 CCDC94Q9BW85 323 aaPredicted RBP17.2■□□□□ 0.34
PTPN9-201ENST00000306726 ATRNO75882 1429 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 HSPA4P34932 840 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 ZCRB1Q8TBF4 217 aaKnown RBP17.2■□□□□ 0.34
PTPN9-201ENST00000306726 ECHDC1Q9NTX5 307 aa17.2■□□□□ 0.34
PTPN9-201ENST00000306726 MEGF6O75095 1541 aa17.19■□□□□ 0.34
PTPN9-201ENST00000306726 CHMP4AQ9BY43 222 aa17.19■□□□□ 0.34
PTPN9-201ENST00000306726 WASHC4Q2M389 1173 aa17.19■□□□□ 0.34
PTPN9-201ENST00000306726 AFF2P51816 1311 aa17.19■□□□□ 0.34
PTPN9-201ENST00000306726 NR1I2O75469 434 aa17.19■□□□□ 0.34
PTPN9-201ENST00000306726 TNS2Q63HR2 1409 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 CCDC73Q6ZRK6 1079 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 CCDC144CPQ8IYA2 1237 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 MTMR6Q9Y217 621 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 CREB3L3Q68CJ9 461 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 APPP05067 770 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 FKBP4Q02790 459 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTPN9-201ENST00000306726 PDILTQ8N807 584 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 ZSWIM4Q9H7M6 989 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 CBX8Q9HC52 389 aa17.18■□□□□ 0.34
PTPN9-201ENST00000306726 RNF20Q5VTR2 975 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 MYD88Q99836 296 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 LRRC37A3O60309 1634 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 ZBTB22O15209 634 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 POLR3GO15318 223 aaPredicted RBP17.17■□□□□ 0.34
PTPN9-201ENST00000306726 HS1BP3Q53T59 392 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 A0A0D9SFI3 127 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 VGLL3A8MV65 326 aa17.17■□□□□ 0.34
PTPN9-201ENST00000306726 ADAMTS7Q9UKP4 1686 aa17.16■□□□□ 0.34
PTPN9-201ENST00000306726 KINO60870 393 aaKnown RBP17.16■□□□□ 0.34
PTPN9-201ENST00000306726 DCAF5Q96JK2 942 aa17.16■□□□□ 0.34
PTPN9-201ENST00000306726 DLG5Q8TDM6 1919 aa17.16■□□□□ 0.34
PTPN9-201ENST00000306726 RXRAP19793 462 aa17.16■□□□□ 0.34
PTPN9-201ENST00000306726 EXOC5O00471 708 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 INTS4Q96HW7 963 aaKnown RBP17.15■□□□□ 0.34
PTPN9-201ENST00000306726 UBE3BQ7Z3V4 1068 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 RAD50Q92878 1312 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 MCM5P33992 734 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 CUL4AQ13619 759 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 ZNF710Q8N1W2 664 aa17.15■□□□□ 0.34
PTPN9-201ENST00000306726 NEXNQ0ZGT2 675 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 FAM200AQ8TCP9 573 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 PHKG2P15735 406 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 APOBRQ0VD83 1088 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 NKX1-1Q15270 411 aaPredicted RBP17.14■□□□□ 0.33
PTPN9-201ENST00000306726 LSG1Q9H089 658 aaKnown RBP17.14■□□□□ 0.33
PTPN9-201ENST00000306726 BICC1Q9H694 974 aaKnown RBP17.14■□□□□ 0.33
PTPN9-201ENST00000306726 HYPKQ9NX55 129 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 CEMIPQ8WUJ3 1361 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 Q6ZUG5 572 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 KCNF1Q9H3M0 494 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 GJB4Q9NTQ9 266 aa17.14■□□□□ 0.33
PTPN9-201ENST00000306726 GOLIM4O00461 696 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 EAF2Q96CJ1 260 aaPredicted RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 ATP10DQ9P241 1426 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 LETM1O95202 739 aaPredicted RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 SKILP12757 684 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 PSMA5P28066 241 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 GOLGA8FQ08AF8 430 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 GOLGA8DPQ0D2H9 430 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 ZNF589Q86UQ0 364 aaPredicted RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 A0A1B0GVL5 298 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 TULP1O00294 542 aaPredicted RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 ANAPC15P60006 121 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 MTERF4Q7Z6M4 381 aaKnown RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 CCAR1Q8IX12 1150 aaKnown RBP17.13■□□□□ 0.33
PTPN9-201ENST00000306726 AOPEPQ8N6M6 819 aa17.13■□□□□ 0.33
PTPN9-201ENST00000306726 CPLX1O14810 134 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 GTF3C6Q969F1 213 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 MRC1P22897 1456 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 PTPN14Q15678 1187 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 HSP90AB4PQ58FF6 505 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 FSIP1Q8NA03 581 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 GJD4Q96KN9 370 aaPredicted RBP17.12■□□□□ 0.33
PTPN9-201ENST00000306726 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.12■□□□□ 0.33
PTPN9-201ENST00000306726 DDB1Q16531 1140 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 THSD7AQ9UPZ6 1657 aa17.12■□□□□ 0.33
PTPN9-201ENST00000306726 ERVV-2B6SEH9 535 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms