RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ZNF526Q8TF50 670 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 FAM212AQ96EL1 285 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 KIAA1107Q9UPP5 1409 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 PRDM2Q13029 1718 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 CAPN2P17655 700 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 LACTBP83111 547 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 ARID5AQ03989 594 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 GBP7Q8N8V2 638 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-201ENST00000302528 UNC13AQ9UPW8 1703 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 SPAG1Q07617 926 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 NBPF1Q3BBV0 1214 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 CCDC25Q86WR0 208 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 RAB11FIP4Q86YS3 637 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 VPS52Q8N1B4 723 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 PRIMPOLQ96LW4 560 aa11.78□□□□□ -0.52
CLIP1-201ENST00000302528 ZEB2O60315 1214 aa11.77□□□□□ -0.52
CLIP1-201ENST00000302528 SYKP43405 635 aa11.77□□□□□ -0.52
CLIP1-201ENST00000302528 FAM184BQ9ULE4 1060 aa11.77□□□□□ -0.52
CLIP1-201ENST00000302528 RASA3Q14644 834 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 INF2Q27J81 1249 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 MTRF1LQ9UGC7 380 aaKnown RBP11.77□□□□□ -0.53
CLIP1-201ENST00000302528 TRAF1Q13077 416 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 PPP1R7Q15435 360 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 ERCC3P19447 782 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 GRM1Q13255 1194 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 HSPA1LP34931 641 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 NFE2L2Q16236 605 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 INTS8Q75QN2 995 aaKnown RBP11.77□□□□□ -0.53
CLIP1-201ENST00000302528 NCOA7Q8NI08 942 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 VCX3BQ9H321 246 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 STX8Q9UNK0 236 aa11.77□□□□□ -0.53
CLIP1-201ENST00000302528 RTEL1-TNFRSF6BF6WH68 1400 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 CTAGE9A4FU28 777 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 FCHSD2O94868 740 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 HAND2P61296 217 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 JAKMIP2Q96AA8 810 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 DAPK1P53355 1430 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 HECW1Q76N89 1606 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 PSMA7O14818 248 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 ARFGAP2Q8N6H7 521 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 UVSSAQ2YD98 709 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 HSP90AA4PQ58FG1 418 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 NUF2Q9BZD4 464 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 KRT83P78385 493 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 NEDD9Q14511 834 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 TMCO4Q5TGY1 634 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 EVI5LQ96CN4 794 aa11.76□□□□□ -0.53
CLIP1-201ENST00000302528 MAK16Q9BXY0 300 aaKnown RBP11.76□□□□□ -0.53
CLIP1-201ENST00000302528 LUC7L2Q9Y383 392 aaKnown RBP11.76□□□□□ -0.53
CLIP1-201ENST00000302528 PPFIA3O75145 1194 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 BMP15O95972 392 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 ASIC1P78348 528 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 TAF7Q15545 349 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 TTC31Q49AM3 519 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 TNPO1Q92973 898 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 PTPN23Q9H3S7 1636 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 NCOA1Q15788 1441 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CLUL1Q15846 466 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 DNMBPQ6XZF7 1577 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 ABCA10Q8WWZ4 1543 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 FLIIQ13045 1269 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CALCOCO2Q13137 446 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 PSMD6Q15008 389 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 DNAJC21Q5F1R6 531 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 IFT81Q8WYA0 676 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CPSF2Q9P2I0 782 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 KRT86O43790 486 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 UAP1Q16222 522 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 ERCC6LQ2NKX8 1250 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 GOLGA1Q92805 767 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CAPZA3Q96KX2 299 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CDC5LQ99459 802 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 FAM114A2Q9NRY5 505 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 SKILP12757 684 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 UBE2HP62256 183 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 SARNPP82979 210 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 MPRIPQ6WCQ1 1025 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CACNA2D3Q8IZS8 1091 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 CRNKL1Q9BZJ0 848 aaKnown RBP11.75□□□□□ -0.53
CLIP1-201ENST00000302528 NKIRAS1Q9NYS0 192 aa11.75□□□□□ -0.53
CLIP1-201ENST00000302528 PPP1R21Q6ZMI0 780 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CC2D2AQ9P2K1 1620 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 TSPY3P0CV98 308 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 TSPY8P0CW00 308 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CUL4BQ13620 913 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CEP85LQ5SZL2 805 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 MCM10Q7L590 875 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 SIRT1Q96EB6 747 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 NEK1Q96PY6 1258 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 GPTP24298 496 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 NBPF11Q86T75 865 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CCDC65Q8IXS2 484 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 CCDC89Q8N998 374 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 SMARCC2Q8TAQ2 1214 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 C6orf50Q9HD87 102 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 SNRKQ9NRH2 765 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 SWAP70Q9UH65 585 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 GSTO1P78417 241 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 BIRC2Q13490 618 aa11.74□□□□□ -0.53
CLIP1-201ENST00000302528 AKNAD1Q5T1N1 836 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms