RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 HDGFL1Q5TGJ6 251 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 G2E3Q7L622 706 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 SSH1Q8WYL5 1049 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 SMARCC1Q92922 1105 aaPredicted RBP8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 SPSB2Q99619 263 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 EP400Q96L91 3159 aa8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 BCAR3O75815 825 aa8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 SNRPA1P09661 255 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 CYP19A1P11511 503 aaPredicted RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 MYL6BP14649 208 aa8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 CANXP27824 592 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 MLLT3P42568 568 aaPredicted RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 CRKLP46109 303 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 NFX1Q12986 1120 aaKnown RBP8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 CAMKK2Q96RR4 588 aa8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 C4AP0C0L4 1744 aa8.36□□□□□ -1.07
DEPDC4-201ENST00000299185 SCN7AQ01118 1682 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 ZNF831Q5JPB2 1677 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 GNPATO15228 680 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 PLIN1O60240 522 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 BAG6P46379 1132 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 INTS5Q6P9B9 1019 aaKnown RBP8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 PHAXQ9H814 394 aaKnown RBP8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 SMC4Q9NTJ3 1288 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 BABAM1Q9NWV8 329 aa8.35□□□□□ -1.07
DEPDC4-201ENST00000299185 UBR3Q6ZT12 1888 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 SOS1Q07889 1333 aaPredicted RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 RARSP54136 660 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 IRX6P78412 446 aaPredicted RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 AIMP1Q12904 312 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 SF3B2Q13435 895 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 TTLL7Q6ZT98 887 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 LRP10Q7Z4F1 713 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 XAGE3Q8WTP9 111 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 PDGFDQ9GZP0 370 aaPredicted RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 CCDC87Q9NVE4 849 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 SRP68Q9UHB9 627 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 COL15A1P39059 1388 aa8.34□□□□□ -1.07
DEPDC4-201ENST00000299185 CNTNAP4Q9C0A0 1308 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 BCORQ6W2J9 1755 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 F6X3S4 739 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 PUS10Q3MIT2 529 aaKnown RBP8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 C20orf194Q5TEA3 1177 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 AK7Q96M32 723 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 RCAN3Q9UKA8 241 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 ADCY9O60503 1353 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 ARFGEF2Q9Y6D5 1785 aa8.33□□□□□ -1.08
DEPDC4-201ENST00000299185 MSL1Q68DK7 614 aa8.32□□□□□ -1.08
DEPDC4-201ENST00000299185 FRAT1Q92837 279 aaPredicted RBP8.32□□□□□ -1.08
DEPDC4-201ENST00000299185 ZBTB3Q9H5J0 574 aa8.32□□□□□ -1.08
DEPDC4-201ENST00000299185 PNPLA7Q6ZV29 1317 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 TTC24A2A3L6 582 aaPredicted RBP8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 PLSCR1O15162 318 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 OATP04181 439 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 HOXB7P09629 217 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 C1QTNF8P60827 252 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 VSIG10Q8N0Z9 540 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 CLUAP1Q96AJ1 413 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 ARXQ96QS3 562 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 TBC1D2BQ9UPU7 963 aa8.31□□□□□ -1.08
DEPDC4-201ENST00000299185 CASZ1Q86V15 1759 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 FAM181BA6NEQ2 426 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 RLBP1P12271 317 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 RRP1P56182 461 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 FLIIQ13045 1269 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 HLFQ16534 295 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 SLC27A3Q5K4L6 730 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 CCDC30Q5VVM6 783 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 COPS6Q7L5N1 327 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 PANK1Q8TE04 598 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 STK31Q9BXU1 1019 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 SENP2Q9HC62 589 aa8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 DDX21Q9NR30 783 aaKnown RBP eCLIP8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 NOB1Q9ULX3 412 aaKnown RBP8.3□□□□□ -1.08
DEPDC4-201ENST00000299185 CAMTA2O94983 1202 aa8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 STARD3NLO95772 234 aa8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 TRIM27P14373 513 aa8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 EIF5P55010 431 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 R3HDM1Q15032 1099 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 COL23A1Q86Y22 540 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 JARID2Q92833 1246 aaPredicted RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 ARHGEF1Q92888 912 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 STK32BQ9NY57 414 aa8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 FCF1Q9Y324 198 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 SUPT16HQ9Y5B9 1047 aaKnown RBP8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 ERBB4Q15303 1308 aa8.29□□□□□ -1.08
DEPDC4-201ENST00000299185 FAM177BA6PVY3 158 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 ATP5J2-PTCD1G3V325 749 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 TERTO14746 1132 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 ZBTB24O43167 697 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 RPS6KA4O75676 772 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 GPTP24298 496 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 FKBP5Q13451 457 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 USPL1Q5W0Q7 1092 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 BICDL1Q6ZP65 573 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 DZIP3Q86Y13 1208 aaKnown RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 CCDC24Q8N4L8 307 aa8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 ZNF784Q8NCA9 323 aaPredicted RBP8.28□□□□□ -1.08
DEPDC4-201ENST00000299185 TFCP2L1Q9NZI6 479 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms