RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 DACT1Q9NYF0 836 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 RGS12O14924 1447 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 CCDC151A5D8V7 595 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 IQCB1Q15051 598 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 ISM2Q6H9L7 571 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 TRIM65Q6PJ69 517 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 RSRC2Q7L4I2 434 aaKnown RBP10.68□□□□□ -0.7
PDGFC-201ENST00000274071 SH3GL3Q99963 347 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 MSH6P52701 1360 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 TTC41PQ6P2S7 1318 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 EVC2Q86UK5 1308 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 PHACTR2O75167 634 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 COQ9O75208 318 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 RBM43Q6ZSC3 357 aaKnown RBP10.68□□□□□ -0.7
PDGFC-201ENST00000274071 CABS1Q96KC9 395 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 ODF2LQ9ULJ1 636 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 FAM169AQ9Y6X4 670 aa10.68□□□□□ -0.7
PDGFC-201ENST00000274071 GOLGA6L19H0YKK7 550 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 AP1G2O75843 785 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 PREPLQ4J6C6 727 aaPredicted RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 ARMC2Q8NEN0 867 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 DDX11Q96FC9 970 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 PAIP2Q9BPZ3 127 aaKnown RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 CPSF2Q9P2I0 782 aaKnown RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 ARHGEF28Q8N1W1 1705 aaKnown RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 SOS1Q07889 1333 aaPredicted RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 MRPL12P52815 198 aaKnown RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 BEND6Q5SZJ8 279 aaPredicted RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 TEX13AQ9BXU3 409 aaPredicted RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 ESF1Q9H501 851 aaKnown RBP10.67□□□□□ -0.7
PDGFC-201ENST00000274071 DCTPP1Q9H773 170 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 MED14O60244 1454 aa10.67□□□□□ -0.7
PDGFC-201ENST00000274071 GSDMDP57764 484 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 HDXQ7Z353 690 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 TTC6Q86TZ1 520 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.66□□□□□ -0.7
PDGFC-201ENST00000274071 RABGGTAQ92696 567 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 BAG1Q99933 345 aaPredicted RBP10.66□□□□□ -0.7
PDGFC-201ENST00000274071 TTC21BQ7Z4L5 1316 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 CHUKO15111 745 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 RDXP35241 583 aaKnown RBP10.66□□□□□ -0.7
PDGFC-201ENST00000274071 RWDD2BP57060 319 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 C1QTNF12Q5T7M4 302 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 ERCC4Q92889 916 aaPredicted RBP10.66□□□□□ -0.7
PDGFC-201ENST00000274071 FAM204AQ9H8W3 233 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 SPATS2LQ9NUQ6 558 aaKnown RBP10.66□□□□□ -0.7
PDGFC-201ENST00000274071 ARHGEF40Q8TER5 1519 aa10.66□□□□□ -0.7
PDGFC-201ENST00000274071 ANAPC15P60006 121 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 BRD3Q15059 726 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 PSMD1Q99460 953 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 OSBPL5Q9H0X9 879 aaPredicted RBP10.65□□□□□ -0.7
PDGFC-201ENST00000274071 PRDM16Q9HAZ2 1276 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 KINO60870 393 aaKnown RBP10.65□□□□□ -0.7
PDGFC-201ENST00000274071 CHMLP26374 656 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 ATP2B2Q01814 1243 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 ARMC3Q5W041 872 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 WWC2Q6AWC2 1192 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 MSL3Q8N5Y2 521 aaKnown RBP10.65□□□□□ -0.7
PDGFC-201ENST00000274071 PUS7Q96PZ0 661 aaKnown RBP10.65□□□□□ -0.7
PDGFC-201ENST00000274071 SUGCTQ9HAC7 445 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 CABP2Q9NPB3 220 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 NSD3Q9BZ95 1437 aa10.65□□□□□ -0.7
PDGFC-201ENST00000274071 SKAP2O75563 359 aaPredicted RBP10.65□□□□□ -0.71
PDGFC-201ENST00000274071 IFIT2P09913 472 aaKnown RBP10.65□□□□□ -0.71
PDGFC-201ENST00000274071 TXLNAP40222 546 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 TRAF1Q13077 416 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 PSMD2Q13200 908 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 MTA1Q13330 715 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 WLSQ5T9L3 541 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 ARMCX5Q6P1M9 558 aa10.65□□□□□ -0.71
PDGFC-201ENST00000274071 HNRNPLLQ8WVV9 542 aaKnown RBP10.65□□□□□ -0.71
PDGFC-201ENST00000274071 ABCC11Q96J66 1382 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 MYO1FO00160 1098 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 DTNBO60941 627 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 EIF3JO75822 258 aaKnown RBP10.64□□□□□ -0.71
PDGFC-201ENST00000274071 CAVIN2O95810 425 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 INPP5BP32019 993 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 KCNJ6P48051 423 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 CCT5P48643 541 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 MAP3K9P80192 1104 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 SNX1Q13596 522 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 TBC1D25Q3MII6 688 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 IQCA1Q86XH1 822 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 KLHL23Q8NBE8 558 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 FAM71BQ8TC56 605 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 MICAL1Q8TDZ2 1067 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 L1RE1Q9UN81 338 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 MTMR6Q9Y217 621 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 SPATA31D1Q6ZQQ2 1576 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 SHPRHQ149N8 1683 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 ANKRD18BA2A2Z9 1011 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 POTEDQ86YR6 584 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 PIK3R5Q8WYR1 880 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 CLSTN2Q9H4D0 955 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 KIF9Q9HAQ2 790 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 CAPN7Q9Y6W3 813 aa10.64□□□□□ -0.71
PDGFC-201ENST00000274071 TULP4Q9NRJ4 1543 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 YTHDC2Q9H6S0 1430 aaKnown RBP10.63□□□□□ -0.71
PDGFC-201ENST00000274071 FRMD3A2A2Y4 597 aa10.63□□□□□ -0.71
PDGFC-201ENST00000274071 EBAG9O00559 213 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms