RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RBM25P49756 843 aaKnown RBP17.17■□□□□ 0.34
SS18-201ENST00000269137 ATP2B3Q16720 1220 aa17.17■□□□□ 0.34
SS18-201ENST00000269137 COL23A1Q86Y22 540 aaPredicted RBP17.17■□□□□ 0.34
SS18-201ENST00000269137 REC8O95072 547 aa17.16■□□□□ 0.34
SS18-201ENST00000269137 NLGN1Q8N2Q7 840 aa17.16■□□□□ 0.34
SS18-201ENST00000269137 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.16■□□□□ 0.34
SS18-201ENST00000269137 XAGE2Q96GT9 111 aa17.16■□□□□ 0.34
SS18-201ENST00000269137 HAUS7Q99871 368 aa17.16■□□□□ 0.34
SS18-201ENST00000269137 ESYT1Q9BSJ8 1104 aa17.16■□□□□ 0.34
SS18-201ENST00000269137 PRR5LQ6MZQ0 368 aa17.15■□□□□ 0.34
SS18-201ENST00000269137 ANKRD18AQ8IVF6 992 aa17.15■□□□□ 0.34
SS18-201ENST00000269137 IPO9Q96P70 1041 aaKnown RBP17.15■□□□□ 0.34
SS18-201ENST00000269137 NPHP1O15259 732 aa17.14■□□□□ 0.34
SS18-201ENST00000269137 MSH5O43196 834 aa17.14■□□□□ 0.34
SS18-201ENST00000269137 SERPINB2P05120 415 aa17.14■□□□□ 0.34
SS18-201ENST00000269137 EN1Q05925 392 aaPredicted RBP17.14■□□□□ 0.34
SS18-201ENST00000269137 PUM3Q15397 648 aaKnown RBP17.14■□□□□ 0.34
SS18-201ENST00000269137 EZH2Q15910 746 aaKnown RBP17.14■□□□□ 0.34
SS18-201ENST00000269137 DDRGK1Q96HY6 314 aa17.14■□□□□ 0.34
SS18-201ENST00000269137 BSDC1Q9NW68 430 aaPredicted RBP17.14■□□□□ 0.34
SS18-201ENST00000269137 FGFR2P21802 821 aa17.14■□□□□ 0.33
SS18-201ENST00000269137 CCDC158Q5M9N0 1113 aa17.14■□□□□ 0.33
SS18-201ENST00000269137 TICAM2Q86XR7 235 aa17.14■□□□□ 0.33
SS18-201ENST00000269137 USP26Q9BXU7 913 aa17.14■□□□□ 0.33
SS18-201ENST00000269137 PNPLA7Q6ZV29 1317 aa17.14■□□□□ 0.33
SS18-201ENST00000269137 HIP1O00291 1037 aa17.13■□□□□ 0.33
SS18-201ENST00000269137 POLRMTO00411 1230 aaKnown RBP17.13■□□□□ 0.33
SS18-201ENST00000269137 ADORA1P30542 326 aa17.13■□□□□ 0.33
SS18-201ENST00000269137 DDR1Q08345 913 aa17.13■□□□□ 0.33
SS18-201ENST00000269137 LPIN2Q92539 896 aa17.13■□□□□ 0.33
SS18-201ENST00000269137 EPB41L2O43491 1005 aaKnown RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 BAG6P46379 1132 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 RPS8P62241 208 aaKnown RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 ST5P78524 1137 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 SF3B2Q13435 895 aaKnown RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 GORABQ5T7V8 394 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 CCDC24Q8N4L8 307 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 ZNF512BQ96KM6 892 aaPredicted RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 SPEF2Q9C093 1822 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 COL4A1P02462 1669 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 TNRC6CQ9HCJ0 1690 aaKnown RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 SLC15A2Q16348 729 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 DDX46Q7L014 1031 aaKnown RBP17.12■□□□□ 0.33
SS18-201ENST00000269137 RFX7Q2KHR2 1363 aa17.12■□□□□ 0.33
SS18-201ENST00000269137 CHRNDQ07001 517 aa17.11■□□□□ 0.33
SS18-201ENST00000269137 HELBQ8NG08 1087 aaPredicted RBP17.11■□□□□ 0.33
SS18-201ENST00000269137 RUFY2Q8WXA3 655 aa17.11■□□□□ 0.33
SS18-201ENST00000269137 CELF1Q92879 486 aaKnown RBP17.11■□□□□ 0.33
SS18-201ENST00000269137 ANP32EQ9BTT0 268 aa17.11■□□□□ 0.33
SS18-201ENST00000269137 DIAPH3Q9NSV4 1193 aa17.11■□□□□ 0.33
SS18-201ENST00000269137 TAF1P21675 1872 aa17.11■□□□□ 0.33
SS18-201ENST00000269137 SGSM2O43147 1006 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 IFIT1P09914 478 aaKnown RBP17.1■□□□□ 0.33
SS18-201ENST00000269137 SLC5A1P13866 664 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 CRY2Q49AN0 593 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 TTC39AQ5SRH9 613 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 ARAP2Q8WZ64 1704 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 FSD1Q9BTV5 496 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
SS18-201ENST00000269137 STK32BQ9NY57 414 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 QSER1Q2KHR3 1735 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 MINPP1Q9UNW1 487 aa17.1■□□□□ 0.33
SS18-201ENST00000269137 KLRG2A4D1S0 409 aaPredicted RBP17.09■□□□□ 0.33
SS18-201ENST00000269137 TAF5LO75529 589 aa17.09■□□□□ 0.33
SS18-201ENST00000269137 KBTBD3Q8NAB2 608 aa17.09■□□□□ 0.33
SS18-201ENST00000269137 EDC3Q96F86 508 aaKnown RBP17.09■□□□□ 0.33
SS18-201ENST00000269137 DNAJC2Q99543 621 aaKnown RBP17.09■□□□□ 0.33
SS18-201ENST00000269137 PAG1Q9NWQ8 432 aa17.09■□□□□ 0.33
SS18-201ENST00000269137 NRXN2Q9P2S2 1712 aa17.09■□□□□ 0.33
SS18-201ENST00000269137 CWC27Q6UX04 472 aaKnown RBP17.08■□□□□ 0.33
SS18-201ENST00000269137 SNRKQ9NRH2 765 aa17.08■□□□□ 0.33
SS18-201ENST00000269137 UQCRFS1P1P0C7P4 283 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 GRAPQ13588 217 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 UBE4AQ14139 1066 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 CCDC125Q86Z20 511 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 GRAPLQ8TC17 118 aaPredicted RBP17.07■□□□□ 0.32
SS18-201ENST00000269137 IL25Q9H293 177 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 A0A1B0GUL6 1792 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 RAD50Q92878 1312 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 GOLIM4O00461 696 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 ARID4AP29374 1257 aaPredicted RBP17.07■□□□□ 0.32
SS18-201ENST00000269137 CCDC102BQ68D86 513 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 KIF2CQ99661 725 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 ANKRD2Q9GZV1 360 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 NDUFB9Q9Y6M9 179 aa17.07■□□□□ 0.32
SS18-201ENST00000269137 AKAP11Q9UKA4 1901 aa17.06■□□□□ 0.32
SS18-201ENST00000269137 HOXA10P31260 410 aaPredicted RBP17.06■□□□□ 0.32
SS18-201ENST00000269137 ANO2Q9NQ90 1003 aa17.06■□□□□ 0.32
SS18-201ENST00000269137 MMP10P09238 476 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 PHKA1P46020 1223 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 NMIQ13287 307 aaPredicted RBP17.05■□□□□ 0.32
SS18-201ENST00000269137 DEFB132Q7Z7B7 95 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 RPGRQ92834 1020 aaKnown RBP17.05■□□□□ 0.32
SS18-201ENST00000269137 BRIP1Q9BX63 1249 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 PARP3Q9Y6F1 533 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 SNAP23O00161 211 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 SCARF1Q14162 830 aa17.05■□□□□ 0.32
SS18-201ENST00000269137 RBM17Q96I25 401 aaKnown RBP17.05■□□□□ 0.32
SS18-201ENST00000269137 MCAMP43121 646 aa17.04■□□□□ 0.32
SS18-201ENST00000269137 FKBP4Q02790 459 aaKnown RBP eCLIP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms