RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RREB1Q92766 1687 aa19.98■□□□□ 0.79
USP4-201ENST00000265560 KIAA1211Q6ZU35 1233 aa19.97■□□□□ 0.79
USP4-201ENST00000265560 ANP32EQ9BTT0 268 aa19.97■□□□□ 0.79
USP4-201ENST00000265560 ABCC12Q96J65 1359 aa19.97■□□□□ 0.79
USP4-201ENST00000265560 ZNF589Q86UQ0 364 aaPredicted RBP19.97■□□□□ 0.79
USP4-201ENST00000265560 COL4A1P02462 1669 aa19.97■□□□□ 0.79
USP4-201ENST00000265560 ZNF609O15014 1411 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 APBA3O96018 575 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 RXRBP28702 533 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 CCDC152Q4G0S7 254 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 TTC39AQ5SRH9 613 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 RIC1Q4ADV7 1423 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 TXNRD1Q16881 649 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 HAUS7Q99871 368 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 LSG1Q9H089 658 aaKnown RBP19.96■□□□□ 0.79
USP4-201ENST00000265560 RGS17Q9UGC6 210 aaPredicted RBP19.96■□□□□ 0.79
USP4-201ENST00000265560 TAF1LQ8IZX4 1826 aa19.96■□□□□ 0.79
USP4-201ENST00000265560 NEK4P51957 841 aa19.95■□□□□ 0.78
USP4-201ENST00000265560 POTEAQ6S8J7 498 aa19.95■□□□□ 0.78
USP4-201ENST00000265560 RASEFQ8IZ41 740 aa19.95■□□□□ 0.78
USP4-201ENST00000265560 LARP6Q9BRS8 491 aaKnown RBP19.95■□□□□ 0.78
USP4-201ENST00000265560 CPA1P15085 419 aa19.95■□□□□ 0.78
USP4-201ENST00000265560 PAG1Q9NWQ8 432 aa19.95■□□□□ 0.78
USP4-201ENST00000265560 PDE8BO95263 885 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 CCDC158Q5M9N0 1113 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 VGLL2Q8N8G2 317 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 GPR108Q9NPR9 543 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 AKAP2Q9Y2D5 859 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 LY75O60449 1722 aa19.94■□□□□ 0.78
USP4-201ENST00000265560 NFIXQ14938 502 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 IQSEC3Q9UPP2 1182 aaPredicted RBP19.93■□□□□ 0.78
USP4-201ENST00000265560 UTRNP46939 3433 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 HSP90AA1P07900 732 aaKnown RBP19.93■□□□□ 0.78
USP4-201ENST00000265560 CELF1Q92879 486 aaKnown RBP19.93■□□□□ 0.78
USP4-201ENST00000265560 C4BP0C0L5 1744 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 ZAP70P43403 619 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 PHKA1P46020 1223 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 KCNJ4P48050 445 aa19.93■□□□□ 0.78
USP4-201ENST00000265560 PRPF40BQ6NWY9 871 aaKnown RBP19.93■□□□□ 0.78
USP4-201ENST00000265560 DDX60Q8IY21 1712 aaKnown RBP19.92■□□□□ 0.78
USP4-201ENST00000265560 COL9A3Q14050 684 aaPredicted RBP19.92■□□□□ 0.78
USP4-201ENST00000265560 RABEP1Q15276 862 aa19.92■□□□□ 0.78
USP4-201ENST00000265560 RUFY2Q8WXA3 655 aa19.92■□□□□ 0.78
USP4-201ENST00000265560 SRCAPQ6ZRS2 3230 aa19.92■□□□□ 0.78
USP4-201ENST00000265560 SPEF2Q9C093 1822 aa19.92■□□□□ 0.78
USP4-201ENST00000265560 IGHMBP2P38935 993 aaKnown RBP19.92■□□□□ 0.78
USP4-201ENST00000265560 CICQ96RK0 1608 aaPredicted RBP19.91■□□□□ 0.78
USP4-201ENST00000265560 DTNBO60941 627 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 TAF6LQ9Y6J9 622 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 RAD50Q92878 1312 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 MCCP23508 829 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 MCAMP43121 646 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 TPTE2Q6XPS3 522 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 BCORQ6W2J9 1755 aa19.91■□□□□ 0.78
USP4-201ENST00000265560 TFCP2L1Q9NZI6 479 aa19.9■□□□□ 0.78
USP4-201ENST00000265560 CHRNDQ07001 517 aa19.9■□□□□ 0.78
USP4-201ENST00000265560 KBTBD3Q8NAB2 608 aa19.9■□□□□ 0.78
USP4-201ENST00000265560 K7ELQ4 463 aaPredicted RBP19.89■□□□□ 0.78
USP4-201ENST00000265560 HSPA4P34932 840 aa19.89■□□□□ 0.78
USP4-201ENST00000265560 SNX21Q969T3 373 aa19.89■□□□□ 0.78
USP4-201ENST00000265560 FBXO3Q9UK99 471 aa19.89■□□□□ 0.78
USP4-201ENST00000265560 ZNF827Q17R98 1081 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 CCDC102BQ68D86 513 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 NLRP3Q96P20 1036 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 SNX14Q9Y5W7 946 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 ZNF831Q5JPB2 1677 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 BCAMP50895 628 aa19.89■□□□□ 0.77
USP4-201ENST00000265560 RBM8AQ9Y5S9 174 aaKnown RBP19.89■□□□□ 0.77
USP4-201ENST00000265560 GYS1P13807 737 aa19.88■□□□□ 0.77
USP4-201ENST00000265560 ADCK5Q3MIX3 580 aa19.88■□□□□ 0.77
USP4-201ENST00000265560 CCDC171Q6TFL3 1326 aa19.88■□□□□ 0.77
USP4-201ENST00000265560 EIF5BO60841 1220 aaKnown RBP19.88■□□□□ 0.77
USP4-201ENST00000265560 VPS53Q5VIR6 699 aa19.88■□□□□ 0.77
USP4-201ENST00000265560 ANKRD18AQ8IVF6 992 aa19.88■□□□□ 0.77
USP4-201ENST00000265560 PUM3Q15397 648 aaKnown RBP19.87■□□□□ 0.77
USP4-201ENST00000265560 MROH5Q6ZUA9 1318 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 WASHC4Q2M389 1173 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 TCEANC2Q96MN5 208 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 CDC5LQ99459 802 aaKnown RBP19.86■□□□□ 0.77
USP4-201ENST00000265560 NYXQ9GZU5 481 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 C4AP0C0L4 1744 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 SLC27A3Q5K4L6 730 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 LPIN2Q92539 896 aa19.86■□□□□ 0.77
USP4-201ENST00000265560 A0A0G2JLW4 131 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 HIP1O00291 1037 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 ST18O60284 1047 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 SF3B3Q15393 1217 aaKnown RBP19.85■□□□□ 0.77
USP4-201ENST00000265560 CNBD1Q8NA66 436 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 IDH1O75874 414 aaKnown RBP19.85■□□□□ 0.77
USP4-201ENST00000265560 CYP2E1P05181 493 aaPredicted RBP19.85■□□□□ 0.77
USP4-201ENST00000265560 GYG1P46976 350 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 SCN7AQ01118 1682 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 FRAT2O75474 233 aaPredicted RBP19.85■□□□□ 0.77
USP4-201ENST00000265560 FGFR2P21802 821 aa19.85■□□□□ 0.77
USP4-201ENST00000265560 KLRK1P26718 216 aa19.84■□□□□ 0.77
USP4-201ENST00000265560 MSL1Q68DK7 614 aa19.84■□□□□ 0.77
USP4-201ENST00000265560 HSP90B1P14625 803 aaKnown RBP19.84■□□□□ 0.77
USP4-201ENST00000265560 CASTP20810 708 aaKnown RBP19.84■□□□□ 0.77
USP4-201ENST00000265560 NFKBIBQ15653 356 aa19.84■□□□□ 0.77
USP4-201ENST00000265560 MCMDC2Q4G0Z9 681 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms