RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NSMAFQ92636 917 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 BCL2L14Q9BZR8 327 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 PCDHAC1Q9H158 963 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 LRMDAQ9H2I8 198 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 C1orf198Q9H425 327 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 INIPQ9NRY2 104 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 DECR2Q9NUI1 292 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 WIPI2Q9Y4P8 454 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 UGT2A1Q9Y4X1 527 aa13.75□□□□□ -0.21
CLN3-246ENST00000636228 A0A0A6YYJ9 748 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 FBP2O00757 339 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 DEAF1O75398 565 aaPredicted RBP13.74□□□□□ -0.21
CLN3-246ENST00000636228 ZNF32P17041 273 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 STOMP27105 288 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 WNT5AP41221 380 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 OR1E2P47887 323 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 TAS2R41P59536 307 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 PIN1Q13526 163 aaPredicted RBP13.74□□□□□ -0.21
CLN3-246ENST00000636228 RABL3Q5HYI8 236 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 THEM4Q5T1C6 240 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 ARMC4Q5T2S8 1044 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 CCDC80Q76M96 950 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 DPPA2Q7Z7J5 298 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 PEG10Q86TG7 708 aaKnown RBP13.74□□□□□ -0.21
CLN3-246ENST00000636228 AKR7LQ8NHP1 331 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 CCL17Q92583 94 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 HDAC2Q92769 488 aaKnown RBP13.74□□□□□ -0.21
CLN3-246ENST00000636228 SGTBQ96EQ0 304 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 SEPHS2Q99611 448 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 TMPRSS13Q9BYE2 586 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 SIAEQ9HAT2 523 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 NPHS2Q9NP85 383 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 CCNB1IP1Q9NPC3 277 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 INTS9Q9NV88 658 aaKnown RBP13.74□□□□□ -0.21
CLN3-246ENST00000636228 NKIRAS2Q9NYR9 191 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 RIMS3Q9UJD0 308 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 PCDHB10Q9UN67 800 aa13.74□□□□□ -0.21
CLN3-246ENST00000636228 LOC100509620A0A075B734 347 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 C5orf49A4QMS7 147 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 MGRN1O60291 552 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 PIP5K1CO60331 668 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 IGHV1-46P01743 117 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 IGHV3-13P01766 116 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 ANPEPP15144 967 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 EPHA1P21709 976 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 ZNF81P51508 661 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 ERVK-25P63136 954 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 NRN1LQ496H8 165 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 C10orf128Q5T292 105 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 INTS11Q5TA45 600 aaKnown RBP13.73□□□□□ -0.21
CLN3-246ENST00000636228 NANOGP8Q6NSW7 305 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 CLDN22Q8N7P3 220 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 TMEM239Q8WW34 195 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 IPCEF1Q8WWN9 437 aaPredicted RBP13.73□□□□□ -0.21
CLN3-246ENST00000636228 NABP1Q96AH0 204 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 POM121L2Q96KW2 1035 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 KCNN2Q9H2S1 579 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 SAP30LQ9HAJ7 183 aa13.73□□□□□ -0.21
CLN3-246ENST00000636228 A0A0G2JND7 137 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 CLDN25C9JDP6 229 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 IGHV2-5P01817 119 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 DAP3P51398 398 aaKnown RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 ZNF133P52736 654 aaPredicted RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 MRPS34P82930 218 aaKnown RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 PSG4Q00888 419 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 TEKQ02763 1124 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 CD47Q08722 323 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 SF3A3Q12874 501 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLN3-246ENST00000636228 TOP3AQ13472 1001 aaPredicted RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 HFEQ30201 348 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 SPRNQ5BIV9 151 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 SLC25A40Q8TBP6 338 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 ZFAND2BQ8WV99 257 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 GCDHQ92947 438 aaPredicted RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 NMD3Q96D46 503 aaKnown RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 MARS2Q96GW9 593 aaKnown RBP13.72□□□□□ -0.21
CLN3-246ENST00000636228 OR2J1Q9GZK6 312 aa13.72□□□□□ -0.21
CLN3-246ENST00000636228 A0A0G2JMP0 313 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 A0A0X1KG70 313 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 ZSCAN5BA6NJL1 495 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 OR5F1O95221 314 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 MT-ND5P03915 603 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 FUT4P22083 530 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 GCH1P30793 250 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 RBM34P42696 430 aaKnown RBP13.71□□□□□ -0.21
CLN3-246ENST00000636228 MMP15P51511 669 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 HILS1P60008 231 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 LCN2P80188 198 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 MOGQ16653 247 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 ZNF718Q3SXZ3 478 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 IGFN1Q86VF2 1251 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 CALHM3Q86XJ0 350 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 OR4M2Q8NGB6 313 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 TSPEARQ8WU66 669 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 RASSF5Q8WWW0 418 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 C22orf15Q8WYQ4 148 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 RAB1CQ92928 201 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 RAB39BQ96DA2 213 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 MAGEB18Q96M61 343 aa13.71□□□□□ -0.21
CLN3-246ENST00000636228 SLC6A7Q99884 636 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms