RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CXCL12P48061 93 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 DUSP3P51452 185 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 CDK16Q00536 496 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 OGDHQ02218 1023 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF92Q03936 586 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 DGUOKQ16854 277 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 SAXO2Q658L1 398 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 DNAJC24Q6P3W2 148 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 CEMP1Q6PRD7 247 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 ARL9Q6T311 187 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 UNQ9165/PRO28630Q6UXU0 137 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 TEX43Q6ZNM6 134 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 FAM9BQ8IZU0 186 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 OR13G1Q8NGZ3 307 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 OR8U1Q8NH10 309 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 LILRB4Q8NHJ6 448 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 PHOSPHO2Q8TCD6 241 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 FAM3DQ96BQ1 224 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 RPRD1AQ96P16 312 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 MFFQ9GZY8 342 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 PPA2Q9H2U2 334 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 FBXO6Q9NRD1 293 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 UVRAGQ9P2Y5 699 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 CDHR2Q9BYE9 1310 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 FOXE1O00358 373 aaPredicted RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 CCL21O00585 134 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 BPY2O14599 106 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 FCMRO60667 390 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 OR7A10O76100 309 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 UTS2O95399 124 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 CD74P04233 296 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 LGALS3P17931 250 aaKnown RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 DTYMKP23919 212 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 DCKP27707 260 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 CASP14P31944 242 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 GRIA1P42261 906 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 SSR1P43307 286 aaKnown RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 CDKN1BP46527 198 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 RFX3P48380 749 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 ATP1B3P54709 279 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 NUTF2P61970 127 aaKnown RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 FLI1Q01543 452 aaPredicted RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 MEF2CQ06413 473 aaPredicted RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 MRPL28Q13084 256 aaKnown RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 BAMBIQ13145 260 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 CLINT1Q14677 625 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 ZSCAN26Q16670 478 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 NADK2Q4G0N4 442 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 THEM4Q5T1C6 240 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 PDZK1Q5T2W1 519 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 ANKRD22Q5VYY1 191 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 ASCL5Q7RTU5 278 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 LHFPL3Q86UP9 236 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 VSTM4Q8IW00 320 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM104Q8NE00 496 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 OR4K5Q8NGD3 323 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 OR1P1Q8NH06 330 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 STMN2Q93045 179 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM54Q969K7 222 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 FLYWCH2Q96CP2 140 aaKnown RBP0.91□□□□□ -2.26
SCN1A-208ENST00000625916 TVP23CQ96ET8 276 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 COPS8Q99627 209 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 TBL1YQ9BQ87 522 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 PARD6BQ9BYG5 372 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 RIBC2Q9H4K1 309 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 SMOXQ9NWM0 555 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 ENOPH1Q9UHY7 261 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 SIGLEC9Q9Y336 463 aa0.91□□□□□ -2.26
SCN1A-208ENST00000625916 A0A0U1RQV1 116 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 VGLL3A8MV65 326 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 DNASE2O00115 360 aaPredicted RBP0.9□□□□□ -2.27
SCN1A-208ENST00000625916 DYNC1I1O14576 645 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 GCM2O75603 506 aaPredicted RBP0.9□□□□□ -2.27
SCN1A-208ENST00000625916 CLDN9O95484 217 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 KRT8P05787 483 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 GLAP06280 429 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 C2P06681 752 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 CT62P0C5K7 136 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 IL1RNP18510 177 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 CD1CP29017 333 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 MAS1LP35410 378 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 AQP2P41181 271 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 TNFSF9P41273 254 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 YAP1P46937 504 aaKnown RBP0.9□□□□□ -2.27
SCN1A-208ENST00000625916 CRISP1P54107 249 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 PRKCDQ05655 676 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 FGL1Q08830 312 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 IL15RAQ13261 267 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 PON2Q15165 354 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 CCNJQ5T5M9 372 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 ENPP6Q6UWR7 440 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 RLN3Q8WXF3 142 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 THRSPQ92748 146 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 EMG1Q92979 244 aaKnown RBP0.9□□□□□ -2.27
SCN1A-208ENST00000625916 PIK3IP1Q96FE7 263 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 SH3GL1Q99961 368 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 TCHPQ9BT92 498 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 FRMD8P1Q9BZ68 369 aaPredicted RBP0.9□□□□□ -2.27
SCN1A-208ENST00000625916 LHX5Q9H2C1 402 aa0.9□□□□□ -2.27
SCN1A-208ENST00000625916 SAV1Q9H4B6 383 aaPredicted RBP0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms