RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SLC22A13Q9Y226 551 aa14.12□□□□□ -0.15
CPSF1-213ENST00000620219 C21orf140B9A014 251 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 EIF1BO60739 113 aaKnown RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 MRPL33O75394 65 aaKnown RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 PLATP00750 562 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 TFP02787 698 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 IL10RAQ13651 578 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 C3AR1Q16581 482 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 BCL2L15Q5TBC7 163 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 SLC43A2Q8N370 569 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ZNRF4Q8WWF5 429 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 BARHL1Q9BZE3 327 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 OR51B6Q9H340 312 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 C12orf49Q9H741 205 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 NEK6Q9HC98 313 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ZFP64Q9NPA5 681 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 UPK1BO75841 260 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 APEX1P27695 318 aaKnown RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 HSF2Q03933 536 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 SCN1BQ07699 218 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 CDCP2Q5VXM1 449 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 GPR148Q8TDV2 347 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ZBTB8AQ96BR9 441 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 TAS2R5Q9NYW4 299 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 VSX1Q9NZR4 365 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 CELSR3Q9NYQ7 3312 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ICE1Q9Y2F5 2266 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 FAM240BA0A1B0GVZ2 78 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF385CQ66K41 422 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 CNEP1R1Q8N9A8 125 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF524Q96C55 264 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 IMMP1LQ96LU5 166 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 SLC6A15Q9H2J7 730 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 SLCO1C1Q9NYB5 712 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 CENPXA8MT69 81 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ASAH2BP0C7U1 165 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 MAPK3P27361 379 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 RASGEF1BQ0VAM2 473 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 C19orf57Q0VDD7 668 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 EMC4Q5J8M3 183 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 TUBA3EQ6PEY2 450 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 IP6K3Q96PC2 410 aa14.11□□□□□ -0.15
CPSF1-213ENST00000620219 ALKBH3Q96Q83 286 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-213ENST00000620219 FER1L5A0AVI2 2057 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PRR33A8MZF0 331 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PHYHO14832 338 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 HCKP08631 526 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 MNDAP41218 407 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 IFITM3Q01628 133 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 TRAM1Q15629 374 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF101Q8IZC7 436 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 MFSD4AQ8N468 514 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PELI1Q96FA3 418 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF281Q9Y2X9 895 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ARID1AO14497 2285 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 IL1AP01583 271 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 CEP78Q5JTW2 689 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PEAR1Q5VY43 1037 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ABHD12BQ7Z5M8 362 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 UXS1Q8NBZ7 420 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 TRMT10AQ8TBZ6 339 aaKnown RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 MRPL39Q9NYK5 338 aaKnown RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 HDGFL3Q9Y3E1 203 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 LRP4O75096 1905 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 LIPT2A6NK58 231 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 CLDN20P56880 219 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 CCBE1Q6UXH8 406 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF627Q7L945 461 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 TMEM178AQ8NBL3 297 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 C1orf198Q9H425 327 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 ENAMQ9NRM1 1142 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 NOSIPQ9Y314 301 aaKnown RBP14.1□□□□□ -0.15
CPSF1-213ENST00000620219 PCDHGA1Q9Y5H4 931 aa14.1□□□□□ -0.15
CPSF1-213ENST00000620219 CIB4A0PJX0 185 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SLC22A23A1A5C7 686 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SYT7O43581 403 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SNRPBP14678 240 aaKnown RBP14.09□□□□□ -0.15
CPSF1-213ENST00000620219 ESPNLQ6ZVH7 1005 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 HSD17B8Q92506 261 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 HGDQ93099 445 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 OXGR1Q96P68 337 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 IQCMA0A1B0GVH7 501 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 CD79AP11912 226 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 MAGEA5P43359 124 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SPOCK1Q08629 439 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SLC10A1Q14973 349 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 Q8N402 240 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 DNAAF1Q8NEP3 725 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 SLC25A46Q96AG3 418 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 TRDV1A0A1B0GX56 115 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 A8MV72 311 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-213ENST00000620219 LIFP15018 202 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF85Q03923 595 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 ALKBH1Q13686 389 aaKnown RBP14.09□□□□□ -0.15
CPSF1-213ENST00000620219 PLXDC2Q6UX71 529 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 GLB1L2Q8IW92 636 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 KLF13Q9Y2Y9 288 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-213ENST00000620219 HRH3Q9Y5N1 445 aa14.09□□□□□ -0.15
CPSF1-213ENST00000620219 A0A1W2PQ09 198 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms